[Wien] Bader surface
Jorissen Kevin
Kevin.Jorissen at ua.ac.be
Mon Aug 4 12:40:09 CEST 2003
If you read the notes proved by JD Fuhr and JO Sofo, you will find the answer to your question.
Case.surf contains first three lines repeating your input (which atom, which mesh did you specify), and then a lot of lines, each containing the spherical coordinates (theta,phi,r) of a point of the bader surface and a weight that you need not bother about if you just want the surface.
To plot the surface, you may have to convert the coordinates to a cartesian system first (that's what I did), but maybe XCrysden can read the case.surf right away?
kind regards, and good luck,
Kevin Jorissen.
-----Original Message-----
From: Vasili Kochin [mailto:kotbasilio00 at yahoo.com]
Sent: Mon 8/4/2003 11:33 AM
To: wien at zeus.theochem.tuwien.ac.at
Cc:
Subject: [Wien] Bader surface
Dear Wien users
could please somebody tell me how do I get the Bader surface?
I run x aim -c and
in the case.surf I find:
9 8.1663920000 3.4545129655 9.1845638380
10 0.0000000000 3.1415926536
10 -0.7853981634 2.3561944902
0.22894430 -0.74441063 0.17351563E+01 -0.69822967E-02
0.22894430 -0.57344020 0.20792188E+01 -0.15651607E-01
0.22894430 -0.28181589 0.16962500E+01 -0.22944280E-01
0.22894430 0.10462227 0.15751562E+01 -0.28199523E-01
0.22894430 0.55154690 0.15341406E+01 -0.30949396E-01
0.22894430 1.01924943 0.15267187E+01 -0.30949396E-01
what is the meaning of these numbers?
in the case.outputaim:
:POSOUT 0.891637E+01 0.363356E+01 0.104710E+02
:STEP 9 r= 1.52551875 iat= 9 ipos= 172 time(sec)= 0.24000 nstep= 1
:POSINIT 0.892789E+01 0.353447E+01 0.105049E+02
r < rmin r= 1.500786819968286 iat= 9 ipos= 172
:POSOUT 0.891685E+01 0.363364E+01 0.104718E+02
:STEP 10 r= 1.52630000 iat= 9 ipos= 172 time(sec)= 0.23000 nstep= 1
:RSUR 0.52551966 0.10462227 0.15266906E+01 -0.63212417E-01 28.0100
:RSUR 0.52551966 0.55154690 0.15220891E+01 -0.69376567E-01 0.0000
:RSUR 0.52551966 1.01924943 0.15224798E+01 -0.69376567E-01 0.0000
:RSUR 0.52551966 1.46617406 0.15220891E+01 -0.63212417E-01 0.0000
:RSUR 0.52551966 1.85261222 0.15224798E+01 -0.51432195E-01 0.0000
what does this mean?
thanks a.lot for the answers
Vasili
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