[Wien] Fail to compile wien2k (to Enrico) TO WHOM IT MAY HELP
César de la Fuente
cesar at unizar.es
Thu Dec 15 17:19:43 CET 2005
Hi,
My ifort version is 9.0.021. in REHL 4 (Update 2)
Intel's people said me the same as you. Only now, after 6 weeks or so, they
realized the bug. Now, I can work fine and link without any problem the
wien2k programs. (Intel people said me that only in a newer version will be
fixed...probably for version 10 or so. If you like to follow the problem
web-link with softwareforum.intel.com )
It is consider as a quasi-bug because it depend on the language is working
your system (in my case SPANISH).
Anyway, I report the problem to whom it my help (meanwhile a new version
could exist), and because, I have been trying to fix this stupid problem
since weeks in different soft-forums, even in this wien2k-forum.
Cheers
César
-----Mensaje original-----
De: wien-bounces at zeus.theochem.tuwien.ac.at
[mailto:wien-bounces at zeus.theochem.tuwien.ac.at] En nombre de Gerhard Fecher
Enviado el: jueves, 15 de diciembre de 2005 13:52
Para: A Mailing list for WIEN2k users
Asunto: AW: [Wien] Fail to compile wien2k (to Enrico) TO WHOM IT MAY HELP
Which "small xxx" version of ifort 9.0.xxx do you use ?
I had no problems with ifort up to know, at least with SUSE 9.2, 9.3, 10.0
Ciao
Gerhard
-----Ursprüngliche Nachricht-----
Von: wien-bounces at zeus.theochem.tuwien.ac.at im Auftrag von César de la
Fuente
Gesendet: Do 15.12.2005 11:20
An: 'A Mailing list for WIEN2k users'
Betreff: RE: [Wien] Fail to compile wien2k (to Enrico) TO WHOM IT MAY HELP
Hi,
This is to everyone which uses ifort 9.0.
Ifort compiler 9.0 has a quasi-bug.
It introduce an implicit option "--sort-section" (you can see all implicit
options including the parameter -# during the link-procedure) related with
LANG environment variable which is being set to some (but not all) native
languages.
Until the fix could be available in next distributions, anyone can work
around it by setting:
LANG=C
export LANG
in the ifort script.
Cheers
César
-----Mensaje original-----
De: wien-bounces at zeus.theochem.tuwien.ac.at
[mailto:wien-bounces at zeus.theochem.tuwien.ac.at] En nombre de
lombaeb at science.unisa.ac.za
Enviado el: jueves, 01 de diciembre de 2005 16:51
Para: A Mailing list for WIEN2k users
Asunto: Re: [Wien] Fail to compile wien2k (to Enrico)
The only other suggestion I have is:
in ~/wien2k/
delete the INSTALLDATE file
edit the OPTIONS file to read as follows:
current:FOPT:-FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML
current:FPOPT:-FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML
current:LDFLAGS:-L/opt/intel/fce/9.0/lib -L/opt/intel/mkl/8.0/lib/em64t
-lguide -lguide_stats -lsvml -lpthread current:DPARALLEL:'-DParallel'
current:R_LIBS:-lmkl_lapack -lmkl_em64t -lguide -lguide_stats -lpthread
current:RP_LIBS:-L /usr/local/SCALAPACK -L /usr/local/BLACS/LIB -lpblas
-lredist -ltools -lscalapack -lfblacs -lblacs -lmpi
run siteconfig, choosing option J
do not change any options when siteconfig asks for compiler options and
libraries
recompile.
(This works for sure on SUSE 10.0 and RH Enterprize Linux 3.)
Regards
Enrico
On Tue, 29 Nov 2005, Gerhard H Fecher wrote:
> I wonder where you found the options
> -Vaxlib -static-libcxa -pthread
> in the Intel compiler manual, they will not work that way. The first
> two are not longer in use since some years and the last one should
> read -lpthread.You will find a lot of postings on suggested switches
> that are correct, please search through the mailing list.
>
> Ciao
> Gerhard
>
> Am Dienstag, 29. November 2005 17:30 schrieb César de la Fuente:
> > To Enrico
> >
> > Thanks for your suggestions but No way to your points 1, 2 and 3.
> >
> > Seems like LD-linker of RHE4_WS does not match with Intel softs, or
> > my ld linker completely is out or they do not talk the same
> > universal script-language.
> >
> > Could be a problem of Intel?, I ll try to find the answer in the
> > Intel forums.
> >
> > Meanwhile, I will change from Red Hat Enterprise 4 to 3 (It should
> > be much more developed).
> >
> > Thanks anyway.
> > Cesar.
> >
> >
> > Dr. César de la Fuente
> > add1: Facultad de Ciencias - Dep. Física de la Materia Condensada
> > Ciudad Universitaria, 50009 Zaragoza, SPAIN
> > add2: Centro Politécnico Superior - Dep. Física de la Materia
> > Condensada C/María de Luna, 3, 50018 Zaragoza, SPAIN Tfno. 34
> > 976762395
> > Fax: 34 976762395
> >
> >
> >
> >
> >
> > -----Mensaje original-----
> > De: wien-bounces at zeus.theochem.tuwien.ac.at
> > [mailto:wien-bounces at zeus.theochem.tuwien.ac.at] En nombre de
> > lombaeb at science.unisa.ac.za Enviado el: lunes, 28 de noviembre de
> > 2005 15:52
> > Para: A Mailing list for WIEN2k users
> > Asunto: Re: [Wien] Fail to compile wien2k
> >
> > 1. From the error message it looks like the option '--sort-section'
> > is passed to the linker (ld) and ld does not understand it. Check to
> > see where this option is being specified. Try "info ld" for hints,
> > and look in /etc/ld.so.conf and /etc/ld.so.conf.d/*.conf
> >
> > 2. The LD_ASSUME_KERNEL version specified may be a problem. Intel
> > requires that it is set to 2.4.1 on RH Enterprize Linux 3.0, despite
> > the fact that the actual kernel version is 2.6.9. I have also
> > successfully used it set to 2.4.10.
> >
> > 3. In the .bash_profile:
> >
> > I suggest to change
> >
> > LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/mkl/8.0/lib/em64t:/opt/i
> > ntel/fce
> > /9.0/lib:/opt/intel/cce/9.0/lib
> >
> > to
> >
> > LD_LIBRARY_PATH=/opt/intel/mkl/8.0/lib/em64t:/opt/intel/fce/9.0/lib:
> > /opt/int
> > el/cce/9.0/lib
> >
> > since by adding the "$LD_LIBRARY_PATH:", you assume that this
> > already exists as an environment variable, which is most likely not the
case.
> > During login that statement will fail because the LD_LIBRARY_PATH
> > variable is not yet known at that point. The rest of the script will
> > most likely also not be executed.
> >
> > This would imply that LD_LIBRARY_PATH (and also LD_ASSUME_KERNEL,
> > since it is lower in the script) are not set at all. Check this by
typing
> > echo $LD_ASSUME_KERNEL and echo $LD_LIBRARY_PATH
> > to see whether they are defined.
> >
> > Hope this helps
> >
> > Regards
> >
> > Enrico
> >
> > --
> > Dr E B Lombardi
> > Physics Department
> > University of South Africa
> > P.O. Box 392
> > 0003 UNISA
> > South Africa
> > Tel: +27 (0)12 429-8027
> > Fax: +27 (0)12 429-3643
> > e-mail: lombaeb at science.unisa.ac.za
> >
> >
> >
> > >
> > > It looks as if your linker is misconfigured
> > >
> > > > ld: opción `--sort-section' no reconocida
> > > > ld: use la opción --help para información de modo de empleo
> > > > make: *** [symmetso] Error 1
> > >
> > > --sort_section has nothing to do with WIEN2k
> > >
> > > Maybe it is connected with your Redhat version and the export
> > > LD_ASSUME_KERNEL=2.6.9 statement...
> > >
> > >
> > > >
> > > > This is an email for Peter Baha, but all wien2k users are wellcome:
> > > >
> > > > I can not compile the code.
> > > > All programas have errors in the link procedures of the libraries.
> > > >
> > > > My platform is an Intel at Xenon@ dual em64t and the operating
> > > > system is RedHat Enterprise 4.0 and the release is WIEN2k_05.6
> > > >
> > > > I try to compile with the following wien2k configuration
> > > > (without first MPI and SCALAPACK). The wien2k settings are:
> > > > Compiler options:
> > > > -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML Linker Flags:
> > > > -L/opt/intel/fce/9.0/lib -L/opt/intel/mkl/8.0/lib/em64t -Vaxlib
> > > > -static-libcxa -pthread
> > > > Preprocessor flags
> > > > '-DParallel'
> > > > R_LIB (LAPACK+BLAS):
> > > > -lmkl_lapack -lmkl_em64t -lguide
> > > >
> > > > ifort -o ./symmetso -FR -mp1 -w -prec_div -pc80 -pad -ip
> > > > -DINTEL_VML symmetso.o angle.o br1dm.o checks.o class.o
> > > > clmchange.o dirdef.o dirdeh.o dirlat.o dot.o gbass.o gtfnam.o
> > > > inverss.o in1ch.o incch.o kurki.o latgen.o latsym.o lmsort.o
> > > > locdef.o lubksb.o ludcmp.o matmm.o matinv.o matrot.o minvec.o
> > > > order.o ordix.o outerr.o pgbsym.o
> > pglsym.o put.o reclat.o rewr.o rotdef.o rstruc.o strwri.o
> > > > symso.o symho.o symop.o volnew.o volofb.o -L/opt/intel/fce/9.0/lib
> > > > -L/opt/intel/mkl/8.0/lib/em64t -Vaxlib -static-libcxa -pthread
> > > > ld: opción `--sort-section' no reconocida
> > > > ld: use la opción --help para información de modo de empleo
> > > > make: *** [symmetso] Error 1
> > > >
> > > >
> > > >
> > > > Someone can say that I not have a fine configuration of the
> > bash.profile.
> > > > I think that not but.... here you are the file for any comment:
> > > >
> > > > # .bash_profile
> > > > # Get the aliases and functions
> > > > if [ -f ~/.bashrc ]; then
> > > > . ~/.bashrc
> > > > fi
> > > > # User specific environment and startup programs
> > > > PATH=$PATH:/opt/intel/mkl/8.0/lib/em64t:/opt/intel/fce/9.0/lib:/
> > > > opt/
> > > > intel/cce/9.0/lib:/opt/intel/cce/9.0/bin:/opt/intel/fce/9.0/bin
> > > > export PATH
> > > > # set up environment for mkl libs in LD_LIBRARY_PATH
> > > > LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/mkl/8.0/lib/em64t:/o
> > > > pt/i ntel/fce/9.0/lib:/opt/intel/cce/9.0/lib
> > > > export LD_LIBRARY_PATH
> > > > # On Red Hat* Enterprise Linux, in order to ensure that the
> > > > correct # support libraries are linked, the environment variable
> > > > LD_ASSUME_KERNEL # must be set export LD_ASSUME_KERNEL=2.6.9
> > > > unset USERNAME
> > > >
> > > >
> > > > Thanks in advance.
> > > > Cesar
> > > >
> > > >
> > > > _______________________________________________
> > > > Wien mailing list
> > > > Wien at zeus.theochem.tuwien.ac.at
> > > > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> > > >
> > >
> > >
> > > P.Blaha
> > > ------------------------------------------------------------------
> > > ----
> > > ---- Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060
> > > Vienna
> > > Phone: +43-1-58801-15671 FAX: +43-1-58801-15698
> > > Email: blaha at theochem.tuwien.ac.at WWW:
> > http://info.tuwien.ac.at/theochem/
> > > ------------------------------------------------------------------
> > > ----
> > > ---- _______________________________________________
> > > Wien mailing list
> > > Wien at zeus.theochem.tuwien.ac.at
> > > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> > >
> >
> > _______________________________________________
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