[Wien] Fail to compile wien2k (to Enrico)
César de la Fuente
cesar at unizar.es
Tue Nov 29 17:30:43 CET 2005
To Enrico
Thanks for your suggestions but No way to your points 1, 2 and 3.
Seems like LD-linker of RHE4_WS does not match with Intel softs,
or my ld linker completely is out or they do not talk the same universal
script-language.
Could be a problem of Intel?, I ll try to find the answer in the Intel
forums.
Meanwhile, I will change from Red Hat Enterprise 4 to 3 (It should be much
more developed).
Thanks anyway.
Cesar.
Dr. César de la Fuente
add1: Facultad de Ciencias - Dep. Física de la Materia Condensada
Ciudad Universitaria, 50009 Zaragoza, SPAIN
add2: Centro Politécnico Superior - Dep. Física de la Materia Condensada
C/María de Luna, 3, 50018 Zaragoza, SPAIN
Tfno. 34 976762395
Fax: 34 976762395
-----Mensaje original-----
De: wien-bounces at zeus.theochem.tuwien.ac.at
[mailto:wien-bounces at zeus.theochem.tuwien.ac.at] En nombre de
lombaeb at science.unisa.ac.za
Enviado el: lunes, 28 de noviembre de 2005 15:52
Para: A Mailing list for WIEN2k users
Asunto: Re: [Wien] Fail to compile wien2k
1. From the error message it looks like the option '--sort-section' is
passed to the linker (ld) and ld does not understand it. Check to see where
this option is being specified. Try "info ld" for hints, and look in
/etc/ld.so.conf and /etc/ld.so.conf.d/*.conf
2. The LD_ASSUME_KERNEL version specified may be a problem. Intel requires
that it is set to 2.4.1 on RH Enterprize Linux 3.0, despite the fact that
the actual kernel version is 2.6.9. I have also successfully used it set to
2.4.10.
3. In the .bash_profile:
I suggest to change
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/mkl/8.0/lib/em64t:/opt/intel/fce
/9.0/lib:/opt/intel/cce/9.0/lib
to
LD_LIBRARY_PATH=/opt/intel/mkl/8.0/lib/em64t:/opt/intel/fce/9.0/lib:/opt/int
el/cce/9.0/lib
since by adding the "$LD_LIBRARY_PATH:", you assume that this already exists
as an environment variable, which is most likely not the case.
During login that statement will fail because the LD_LIBRARY_PATH variable
is not yet known at that point. The rest of the script will most likely also
not be executed.
This would imply that LD_LIBRARY_PATH (and also LD_ASSUME_KERNEL, since it
is lower in the script) are not set at all. Check this by typing
echo $LD_ASSUME_KERNEL and echo $LD_LIBRARY_PATH
to see whether they are defined.
Hope this helps
Regards
Enrico
--
Dr E B Lombardi
Physics Department
University of South Africa
P.O. Box 392
0003 UNISA
South Africa
Tel: +27 (0)12 429-8027
Fax: +27 (0)12 429-3643
e-mail: lombaeb at science.unisa.ac.za
>
> It looks as if your linker is misconfigured
>
> > ld: opción `--sort-section' no reconocida
> > ld: use la opción --help para información de modo de empleo
> > make: *** [symmetso] Error 1
>
> --sort_section has nothing to do with WIEN2k
>
> Maybe it is connected with your Redhat version and the export
> LD_ASSUME_KERNEL=2.6.9 statement...
>
>
> >
> > This is an email for Peter Baha, but all wien2k users are wellcome:
> >
> > I can not compile the code.
> > All programas have errors in the link procedures of the libraries.
> >
> > My platform is an Intel at Xenon@ dual em64t and the operating system
> > is RedHat Enterprise 4.0 and the release is WIEN2k_05.6
> >
> > I try to compile with the following wien2k configuration (without
> > first MPI and SCALAPACK). The wien2k settings are:
> > Compiler options:
> > -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML Linker Flags:
> > -L/opt/intel/fce/9.0/lib -L/opt/intel/mkl/8.0/lib/em64t -Vaxlib
> > -static-libcxa -pthread
> > Preprocessor flags
> > '-DParallel'
> > R_LIB (LAPACK+BLAS):
> > -lmkl_lapack -lmkl_em64t -lguide
> >
> > ifort -o ./symmetso -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML
> > symmetso.o angle.o br1dm.o checks.o class.o clmchange.o dirdef.o
> > dirdeh.o dirlat.o dot.o gbass.o gtfnam.o inverss.o in1ch.o incch.o
> > kurki.o latgen.o latsym.o lmsort.o locdef.o lubksb.o ludcmp.o
> > matmm.o matinv.o matrot.o minvec.o order.o ordix.o outerr.o pgbsym.o
pglsym.o put.o reclat.o rewr.o rotdef.o rstruc.o strwri.o
> > symso.o symho.o symop.o volnew.o volofb.o -L/opt/intel/fce/9.0/lib
> > -L/opt/intel/mkl/8.0/lib/em64t -Vaxlib -static-libcxa -pthread
> > ld: opción `--sort-section' no reconocida
> > ld: use la opción --help para información de modo de empleo
> > make: *** [symmetso] Error 1
> >
> >
> >
> > Someone can say that I not have a fine configuration of the
bash.profile.
> > I think that not but.... here you are the file for any comment:
> >
> > # .bash_profile
> > # Get the aliases and functions
> > if [ -f ~/.bashrc ]; then
> > . ~/.bashrc
> > fi
> > # User specific environment and startup programs
> > PATH=$PATH:/opt/intel/mkl/8.0/lib/em64t:/opt/intel/fce/9.0/lib:/opt/
> > intel/cce/9.0/lib:/opt/intel/cce/9.0/bin:/opt/intel/fce/9.0/bin
> > export PATH
> > # set up environment for mkl libs in LD_LIBRARY_PATH
> > LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/mkl/8.0/lib/em64t:/opt/i
> > ntel/fce/9.0/lib:/opt/intel/cce/9.0/lib
> > export LD_LIBRARY_PATH
> > # On Red Hat* Enterprise Linux, in order to ensure that the correct
> > # support libraries are linked, the environment variable
> > LD_ASSUME_KERNEL # must be set export LD_ASSUME_KERNEL=2.6.9 unset
> > USERNAME
> >
> >
> > Thanks in advance.
> > Cesar
> >
> >
> > _______________________________________________
> > Wien mailing list
> > Wien at zeus.theochem.tuwien.ac.at
> > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> >
>
>
> P.Blaha
> ----------------------------------------------------------------------
> ---- Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060
> Vienna
> Phone: +43-1-58801-15671 FAX: +43-1-58801-15698
> Email: blaha at theochem.tuwien.ac.at WWW:
http://info.tuwien.ac.at/theochem/
> ----------------------------------------------------------------------
> ---- _______________________________________________
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>
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