[Wien] problems with ssh/csh (or so) on a cluster

Ludwig, Christian ludwigc at uni-mainz.de
Wed Sep 17 10:54:19 CEST 2008


Under "host nodes for w2web" it says: "URL including http(s) and port to host-nodes", so I specified
http://node.chemie.uni-mainz.de,
but I also tried without http://

ssh node is working without password, as is needed.

I changed my .machines file to

1:node.chemie.uni-mainz.de
1:node.chemie.uni-mainz.de
granularity:1
extrafine:1
lapw0:node.chemie.uni-mainz.de

when omitting the lapw0:node.chemie.uni-mainz.de in the machines file, lapw0 is executed and the crash occurs at lapw1, but with another error message in STDOUT:
Error: Can't open display: localhost:22.0
Host key verification failed.
cat: No match.
And in the console "X11 connection rejected because of wrong authentication." appears. As I said, the key is appended and ssh node is working withour password.



________________________________________
Von: wien-bounces at zeus.theochem.tuwien.ac.at [wien-bounces at zeus.theochem.tuwien.ac.at] im Auftrag von Peter Blaha [pblaha at theochem.tuwien.ac.at]
Gesendet: Mittwoch, 17. September 2008 08:05
An: A Mailing list for WIEN2k users
Betreff: Re: [Wien] problems with ssh/csh (or so) on a cluster

You should not specify an URL, but just a qualified hostname.

You must be able to do on a terminal window:

ssh hostname     or ssh hostname.domain  (like
"homer.physik.uni-mainz.de" or whatever the full hostname is)

and get connected without a password.

Please read the UG about parallelization. Your .machines file does not
make sense. You need at least 2 lines

1:host1
1:host2

to get a 2-node k-point parallelization (on dual or quadcores, host2 can
be equal host1)

The parallelization of
lapw0: host1 host2      needs mpi !!!

> There is no problem with a non-parallel calculation, but as soon as I switch to parallel, I get the following error message:
>
> Pseudo-terminal will not be allocated because stdin is not a terminal.
> ssh: cd /home/ludwigc/Wien2k/test_128;time lapw0 lapw0.def: Name or service not known
>
>>   stop error
>
> I use execution type custom = %f, the URL of the host nodes is given. Machines file is
>
> 1:<URL host node>
> granularity:1
> extrafine:1
> lapw0:<URL host node>
>
> The rsa key is appended to authorized_keys. If you need any more information to help, please tell me.
>
> All the best,
> Christian Ludwig
>
> _______________________________________________
> Wien mailing list
> Wien at zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
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