[Wien] segmentation error at dstart, wien2k_09
Peter Blaha
pblaha at theochem.tuwien.ac.at
Tue Feb 17 10:58:27 CET 2009
In siteconfig, choose some default option (ifort+mkl) which fits as close as
possible to your versions, but NOT "generic".
Use the default options, just adapt the mkl-libraries.
Make sure, that FOPT contains -traceback, this hsould give you more info
where the segmentation fault occurs.
Bo Qiu schrieb:
> Yes, I did run userconfig_lapw after siteconfig_lapw. And the lines
> added to .bashrc are:
>
> # added by WIEN2k: BEGIN
> # --------------------------------------------------------
> alias lsi="ls -aslp *.in*"
> alias lso="ls -aslp *.ou*"
> alias lsd="ls -aslp *.def"
> alias lsc="ls -aslp *.cl*"
> alias lss="ls -aslp *.sc*"
> alias lse="ls -aslp *.error"
> alias pslapw="ps -ef |grep "lapw""
> alias cdw="cd /home/ba01/u110/qiub/WIEN2k"
> export OMP_NUM_THREADS=1
> #export LD_LIBRARY_PATH=.....
> export EDITOR="vim"
> export SCRATCH=./
> export WIENROOT=/autohome/u110/qiub/wien2k_09
> export W2WEB_CASE_BASEDIR=/home/ba01/u110/qiub/WIEN2k
> export STRUCTEDIT_PATH=$WIENROOT/SRC_structeditor/bin
> export PDFREADER=xpdf
> export PATH=$PATH:$WIENROOT:$STRUCTEDIT_PATH:.
> export OCTAVE_EXEC_PATH=${PATH}::
> export OCTAVE_PATH=${STRUCTEDIT_PATH}::
>
> export PATH=$PATH:$WIENROOT:.
> ulimit -s unlimited
> alias octave="octave -p $OCTAVE_PATH"
> # --------------------------------------------------------
> # added by WIEN2k: END
>
>
> I think they are set to unlimited... one thing I forgot to mention, I
> installed Wien2k_08 on the node before, and before compilation of
> Wien2k_09, I just removed the Wien2k_08 folder which contains the
> previous version. Could that possibly be partially the reason? Thanks a lot!
>
> Sincerely,
> Bo
>
> On Mon, Feb 16, 2009 at 10:40 AM, Peter Blaha
> <pblaha at theochem.tuwien.ac.at <mailto:pblaha at theochem.tuwien.ac.at>> wrote:
>
> Did you run userconfig_lapw ???
>
> Are your "limits" set to "unlimited" ? (Should be done by userconfig)
>
> Bo Qiu schrieb:
> > Dear Wien2k users and developlers,
> >
> > I'm trying to use Wien2k_09 recently. I compiled with intel ifort and
> > icc compiler, when inside the siteconfig, I first chose
> "generic", then
> > used below option:
> >
> > current:FOPT:-FR -w -mp1 -prec_div -pad -ip
> > current:FPOPT:-O
> > current:LDFLAGS:-L/opt/intel/mkl/9.1/lib/32 -FR -w -mp1 -prec_div
> -pad -ip
> > current:DPARALLEL:'-DParallel'
> > current:R_LIBS:-L/opt/intel/mkl/9.1/lib/32 -lmkl_lapack -lmkl_ia32
> > -lguide -lpthread
> > current:RP_LIBS:
> >
> > ===================================================
> > The compilation seems to be successful since the program
> complained no
> > error at the end.
> > However, when I tried to run a very simple test case, which is
> basically
> > the TiC example in the userguide, I got below error at the "x dstart"
> > step. I tried several times, but the error remained. Could you please
> > help me with that? Thanks a lot!
> >
> > forrtl: severe (174): SIGSEGV, segmentation fault occurred
> > Image PC Routine Line
> > Source
> > dstart 0806984D Unknown Unknown Unknown
> > . FFFFE440 Unknown Unknown Unknown
> > Unknown 00001000 Unknown Unknown Unknown
> > 0.000u 0.004s 0:00.05 0.0% 0+0k 1472+0io 2pf+0w
> > error: command /autohome/u110/qiub/wien2k_09/dstart dstart.def
> failed
> >
> >
> > Thanks and Best Wishes.
> >
> > Sincerely yours,
> > Bo Qiu
> > http://web.ics.purdue.edu/~qiub/homepage/
> <http://web.ics.purdue.edu/%7Eqiub/homepage/>
> >
> >
> >
> ------------------------------------------------------------------------
> >
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>
> --
>
> P.Blaha
> --------------------------------------------------------------------------
> Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
> Phone: +43-1-58801-15671 FAX: +43-1-58801-15698
> Email: blaha at theochem.tuwien.ac.at
> <mailto:blaha at theochem.tuwien.ac.at> WWW:
> http://info.tuwien.ac.at/theochem/
> --------------------------------------------------------------------------
> _______________________________________________
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>
>
>
>
> --
> Thanks and Best Wishes.
>
> Sincerely yours,
> Bo Qiu
> http://web.ics.purdue.edu/~qiub/homepage/
>
>
> ------------------------------------------------------------------------
>
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--
P.Blaha
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Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-15671 FAX: +43-1-58801-15698
Email: blaha at theochem.tuwien.ac.at WWW: http://info.tuwien.ac.at/theochem/
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