[Wien] runsp_lapw error :malloc(): memory corruption: 0x00000000018bde90 ***
Gavin Abo
gsabo at crimson.ua.edu
Thu Dec 22 13:10:51 CET 2011
Dear Sufyan,
It might be a compiler/mkl problem. Most of the Intel Fortran composer
xe compilers don't seem to work with Wien2k (they are giving runtime
memory errors like you have reported).
It looks like you are using Update 6: composer_xe_2011_sp1.6.233
Since you have an Intel processor, you should try using Update 3 of
composer xe and see if the error goes away.
A previous post for Update 3:
http://zeus.theochem.tuwien.ac.at/pipermail/wien/2011-November/015781.html
It looks like Intel recently released a Update 8 (on 14 Dec 2011).
However, I haven't tested or heard from /Intel processor/ user's of
Wien2k whether it works or is bad too.
Kind Regards,
Gavin
On 12/22/2011 5:17 AM, sufyan wrote:
> Dears users,
> i am new user in wien2k community and i need your help ,i use the
> version WIEN11.1 on (opensuse, INTEL I5 64) first i run the example of
> TiC in the user guide and it works very well . but when i run my
> case i have:
>
> Commandline: runsp_lapw -i 560 -ec 0.00000001 -cc 0.000001 -NI
> has been sent to system for execution
> cd /home/sufyan2020/WIEN2k/EuMn2O5;runsp_lapw -i 560 -ec 0.00000001
> -cc 0.000001 -NI
>
> LAPW0 END
> *** glibc detected *** /home/sufyan2020/WIENROOT/lapw1: malloc():
> memory corruption: 0x00000000018bde90 ***
> ======= Backtrace: =========
> /lib64/libc.so.6[0x2b9e85ab3c76]
> /lib64/libc.so.6[0x2b9e85ab6d0e]
> /lib64/libc.so.6(__libc_malloc+0x79)[0x2b9e85ab8a59]
> /home/sufyan2020/WIENROOT/lapw1[0x4a99b3]
> /home/sufyan2020/WIENROOT/lapw1[0x481824]
> /home/sufyan2020/WIENROOT/lapw1[0x480a14]
> /home/sufyan2020/WIENROOT/lapw1[0x485128]
> /lib64/libpthread.so.0[0x2b9e8510bc00]
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_mc3.so[0x2b9e94a4ea10]
> ======= Memory map: ========
> 00400000-005a7000 r-xp 00000000 08:06
> 3149734 /home/sufyan2020/WIENROOT/lapw1
> 007a6000-007a7000 r--p 001a6000 08:06
> 3149734 /home/sufyan2020/WIENROOT/lapw1
> 007a7000-007b6000 rw-p 001a7000 08:06
> 3149734 /home/sufyan2020/WIENROOT/lapw1
> 007b6000-01a41000 rw-p 00000000 00:00
> 0 [heap]
> 2b9e82646000-2b9e82664000 r-xp 00000000 08:05
> 661 /lib64/ld-2.10.1.so <http://ld-2.10.1.so>
> 2b9e82664000-2b9e82666000 rw-p 00000000 00:00 0
> 2b9e82863000-2b9e82864000 r--p 0001d000 08:05
> 661 /lib64/ld-2.10.1.so <http://ld-2.10.1.so>
> 2b9e82864000-2b9e82865000 rw-p 0001e000 08:05
> 661 /lib64/ld-2.10.1.so <http://ld-2.10.1.so>
> 2b9e82865000-2b9e82df3000 r-xp 00000000 08:05
> 542915
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_intel_lp64.so
> 2b9e82df3000-2b9e82ff2000 ---p 0058e000 08:05
> 542915
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_intel_lp64.so
> 2b9e82ff2000-2b9e83000000 rw-p 0058d000 08:05
> 542915
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_intel_lp64.so
> 2b9e83000000-2b9e83005000 rw-p 00000000 00:00 0
> 2b9e83005000-2b9e83d3f000 r-xp 00000000 08:05
> 542917
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_intel_thread.so
> 2b9e83d3f000-2b9e83f3f000 ---p 00d3a000 08:05
> 542917
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_intel_thread.so
> 2b9e83f3f000-2b9e8409d000 rw-p 00d3a000 08:05
> 542917
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_intel_thread.so
> 2b9e8409d000-2b9e840a1000 rw-p 00000000 00:00 0
> 2b9e840a1000-2b9e84eb7000 r-xp 00000000 08:05
> 542909
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_core.so
> 2b9e84eb7000-2b9e850b6000 ---p 00e16000 08:05
> 542909
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_core.so
> 2b9e850b6000-2b9e850c9000 rw-p 00e15000 08:05
> 542909
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_core.so
> 2b9e850c9000-2b9e850da000 rw-p 00000000 00:00 0
> 2b9e850fd000-2b9e85113000 r-xp 00000000 08:05
> 854 /lib64/libpthread-2.10.1.so
> <http://libpthread-2.10.1.so>
> 2b9e85113000-2b9e85313000 ---p 00016000 08:05
> 854 /lib64/libpthread-2.10.1.so
> <http://libpthread-2.10.1.so>
> 2b9e85313000-2b9e85314000 r--p 00016000 08:05
> 854 /lib64/libpthread-2.10.1.so
> <http://libpthread-2.10.1.so>
> 2b9e85314000-2b9e85315000 rw-p 00017000 08:05
> 854 /lib64/libpthread-2.10.1.so
> <http://libpthread-2.10.1.so>
> 2b9e85315000-2b9e85319000 rw-p 00000000 00:00 0
> 2b9e85319000-2b9e8536d000 r-xp 00000000 08:05
> 130 /lib64/libm-2.10.1.so <http://libm-2.10.1.so>
> 2b9e8536d000-2b9e8556c000 ---p 00054000 08:05
> 130 /lib64/libm-2.10.1.so <http://libm-2.10.1.so>
> 2b9e8556c000-2b9e8556d000 r--p 00053000 08:05
> 130 /lib64/libm-2.10.1.so <http://libm-2.10.1.so>
> 2b9e8556d000-2b9e8556e000 rw-p 00054000 08:05
> 130 /lib64/libm-2.10.1.so <http://libm-2.10.1.so>
> 2b9e8556e000-2b9e8556f000 rw-p 00000000 00:00 0
> 2b9e8556f000-2b9e8562e000 r-xp 00000000 08:05
> 529477
> /opt/intel/composer_xe_2011_sp1.6.233/compiler/lib/intel64/libiomp5.so
> 2b9e8562e000-2b9e8582d000 ---p 000bf000 08:05
> 529477
> /opt/intel/composer_xe_2011_sp1.6.233/compiler/lib/intel64/libiomp5.so
> 2b9e8582d000-2b9e85836000 rw-p 000be000 08:05
> 529477
> /opt/intel/composer_xe_2011_sp1.6.233/compiler/lib/intel64/libiomp5.so
> 2b9e85836000-2b9e8583d000 rw-p 00000000 00:00 0
> 2b9e8583d000-2b9e8583f000 r-xp 00000000 08:05
> 152 /lib64/libdl-2.10.1.so <http://libdl-2.10.1.so>
> 2b9e8583f000-2b9e85a3f000 ---p 00002000 08:05
> 152 /lib64/libdl-2.10.1.so <http://libdl-2.10.1.so>
> 2b9e85a3f000-2b9e85a40000 r--p 00002000 08:05
> 152 /lib64/libdl-2.10.1.so <http://libdl-2.10.1.so>
> 2b9e85a40000-2b9e85a41000 rw-p 00003000 08:05
> 152 /lib64/libdl-2.10.1.so <http://libdl-2.10.1.so>
> 2b9e85a41000-2b9e85b92000 r-xp 00000000 08:05
> 124 /lib64/libc-2.10.1.so <http://libc-2.10.1.so>
> 2b9e85b92000-2b9e85d92000 ---p 00151000 08:05
> 124 /lib64/libc-2.10.1.so <http://libc-2.10.1.so>
> 2b9e85d92000-2b9e85d96000 r--p 00151000 08:05
> 124 /lib64/libc-2.10.1.so <http://libc-2.10.1.so>
> 2b9e85d96000-2b9e85d97000 rw-p 00155000 08:05
> 124 /lib64/libc-2.10.1.so <http://libc-2.10.1.so>
> 2b9e85d97000-2b9e85d9d000 rw-p 00000000 00:00 0
> 2b9e85d9d000-2b9e85db2000 r-xp 00000000 08:05
> 4158 /lib64/libgcc_s.so.1
> 2b9e85db2000-2b9e85fb1000 ---p 00015000 08:05
> 4158 /lib64/libgcc_s.so.1
> 2b9e85fb1000-2b9e85fb2000 r--p 00014000 08:05
> 4158 /lib64/libgcc_s.so.1
> 2b9e85fb2000-2b9e85fb3000 rw-p 00015000 08:05
> 4158 /lib64/libgcc_s.so.1
> 2b9e85fb3000-2b9e85fb5000 rw-p 00000000 00:00 0
> 2b9e85fb5000-2b9e864bc000 r-xp 00000000 08:05
> 542930
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_vml_mc3.so
> 2b9e864bc000-2b9e866bc000 ---p 00507000 08:05
> 542930
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_vml_mc3.so
> 2b9e866bc000-2b9e86700000 rw-p 00507000 08:05
> 542930
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_vml_mc3.so
> 2b9e86700000-2b9e86701000 rw-p 00000000 00:00 0
> 2b9e867d0000-2b9e90839000 rw-p 00000000 00:00 0
> 2b9e90839000-2b9e90842000 r--p 00000000 08:05
> 532170
> /opt/intel/composer_xe_2011_sp1.6.233/compiler/lib/intel64/locale/en_US/ifcore_msg.cat
> <http://ifcore_msg.cat>
> 2b9e94487000-2b9e95f17000 r-xp 00000000 08:05
> 542919
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_mc3.so
> 2b9e95f17000-2b9e96116000 ---p 01a90000 08:05
> 542919
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_mc3.so
> 2b9e96116000-2b9e9616b000 rw-p 01a8f000 08:05
> 542919
> /opt/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_mc3.so
> 2b9e9616b000-2b9e9616d000 rw-p 00000000 00:00 0
> 2b9e98000000-2b9e98021000 rw-p 00000000 00:00 0
> 2b9e98021000-2b9e9c000000 ---p 00000000 00:00 0
> 7fff26671000-7fff26688000 rw-p 00000000 00:00
> 0 [stack]
> 7fff267e2000-7fff267e3000 r-xp 00000000 00:00
> 0 [vdso]
> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00
> 0 [vsyscall]
>
> > stop error
>
> thanks
> sufyan naji
>
>
>
>
>
>
>
> _______________________________________________
> Wien mailing list
> Wien at zeus.theochem.tuwien.ac.at
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