[Wien] Problems in phonon calculations (3)
Ghosh SUDDHASATTWA
ssghosh at igcar.gov.in
Sat Jan 8 07:42:21 CET 2011
Dear Wien2k users, and Prof. Blaha,
Can you please help me out in the following querie. As suggested earlier, I
had initialized my phonon calculations with 48 atoms per lattice.
I created and initialized case_1
My phonon job file is
#!/bin/csh -f
#
set file=AB2_phonon
#
foreach i ( \
1 \
2 \
3 \
4 \
5 \
6 \
7 \
8 \
9 \
10 \
11 \
12 \
13 \
14 \
15 \
16 \
17 \
18 \
)
cd case_$i
echo running case_$i
#
# select other options if necessary
run_lapw -I -i 200 -cc 0.0001 -in1ef -p -fc 0.1
#
# select other save-name if necessary
save_lapw case_${i}_gga_rkm7.00_3000k
cd ..
end
I submitted the job by qsub -pe kpoint 24 kpoint.sh
My machine file is
1:ibnx70
1:ibnx70
1:ibnx70
1:ibnx81
1:ibnx81
1:ibnx81
1:ibnx81
1:ibnx81
1:ibnx79
1:ibnx79
1:ibnx79
1:ibnx65
1:ibnx65
1:ibnx60
1:ibnx60
1:ibnx60
1:ibnx60
1:ibnx60
1:ibnx60
1:ibnx60
1:ibnx60
1:ibnx96
1:ibnx96
1:ibnx96
granularity:1
extrafine:1
For the last three days, the queuing shows the job is running
Surprisingly, there is no "running" mode in w2web.
I checked the case_1 directory
case_1.dayfile shows (surprisingly)
Calculating case_1 in
/group5/cg/sghosh/WIEN2k/lapw/phonon/UZr2_phonon/case_1
on nx70.igcar.gov.in with PID 10356
start (Thu Jan 6 19:11:06 IST 2011) with lapw0 (-in1ef/99 to go)
cycle 1 (Thu Jan 6 19:11:06 IST 2011) (-in1ef/99 to go)
> lapw0 -p (19:11:06) starting parallel lapw0 at Thu Jan 6 19:11:06
IST 20
11
-------- .machine0 : processors
running lapw0 in single mode
177.410u 5.691s 3:11.36 95.6% 0+0k 0+0io 17pf+0w
> lapw1 -c -p (19:14:17) starting parallel lapw1 at Thu Jan 6
19:14:1
8 IST 2011
-> starting parallel LAPW1 jobs at Thu Jan 6 19:14:19 IST 2011
running LAPW1 in parallel mode (using .machines)
2 number_of_parallel_jobs
localhost(672) 90833.210u 359.642s 1+01:28:03.65 99.46% 0+0k 0+0io
0pf
+0w
105493.144u 437.929s 1+13:49:58.03 77.78% 0+0k 0+0io 0pf+0w
120959.238u 433.725s 1+09:50:20.14 99.65% 0+0k 0+0io 0pf+0w
localhost(672) 90579.555u 334.655s 1+01:22:25.95 99.53% 0+0k 0+0io
0pf
+0w
105170.999u 500.369s 1+13:44:24.32 77.78% 0+0k 0+0io 0pf+0w
120363.259u 426.543s 1+09:40:41.44 99.63% 0+0k 0+0io 0pf+0w
Summary of lapw1para:
localhost k=1344 user=181413 wallclock=170
73.491u 124.896s 33:50:25.33 0.1% 0+0k 0+0io 0pf+0w
> lapw2 -c -p (05:04:43) running LAPW2 in parallel mode
[1] 4250
[2] 4292
That is 2 number of parallel jobs. I thought it should be 24
Can you please why is this happening?
Thank you
Suddhasattwa
SUDDHASATTWA GHOSH
Scientific Officer (D)
Pyrochemical Process Studies Section
Fuel Chemistry Division
Chemistry Group
Indira Gandhi Centre for Atomic Research
Kalpakkam
Tamilnadu
603102
India
Phone: 91-44-27480500 (Ext:24283)
Fax: 91-44-27480065
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