[Wien] error "setrlimit(): Invalid argument"

Sat Jul 30 10:18:27 CEST 2011

Dear Professor Marks,
Thank you so much for your kind help and your time

Kind regards,
Qiwen

------Original Message------
From:"Laurence Marks"<L-marks at northwestern.edu>
To:"A Mailing list for WIEN2k users"<wien at zeus.theochem.tuwien.ac.at>
Cc:
Subject:Re: [Wien] error "setrlimit(): Invalid argument"
Date:07/29/2011 01:01:50 PM(-0500)
>Yes, and anywhere else (mixer, perhaps some others ) -- do "ls */W2kutils.c"
>
>N.B., of course you only need to recompile the relevant directories.
>
>On Fri, Jul 29, 2011 at 12:51 PM, Dr Qiwen  YAO <Yao.Qiwen at nims.go.jp> wrote:
>> Dear Professor Marks,
>> The file W2kutils.h you sent is identical to the ones in these three directories - they are with the exact same size and I have also checked line by line - no difference found. Both of these original files in my installed WIEN are the same as the corresponding ones at the Wien2k site - I have also checked that.
>>
>> The file W2kutils.c you sent is newer (last changed date Aug 2010) compared to the ones I have in the three directories (time-stamp: Jan 2010). So I replaced this file in the SRC_lapw0 directory and recompiled the WIEN2k, and run "x lapw0 -p" successfully - see below:
>> ================
>> a010220 at asahi01:/data1/a010220/wiendata/SrNdCoO4> x lapw0 -p
>> starting parallel lapw0 at Sat Jul 30 02:29:08 JST 2011
>> -------- .machine0 : processors
>> running lapw0 in single mode
>>  LAPW0 END
>> 293.950u 11.848s 5:07.46 99.4% 0+0k 0+0io 252pf+0w
>> ================
>>
>> So it seems that you've solve the problem!
>>
>> Should i also do the same to the file W2kutils.c for the other two (SRC_lap1,2) directories and recompile the WIEN and then run the parallel job ?
>>
>> Thank you so much for your time and help.
>>
>> Kind regards,
>> Qiwen
>>
>> ------Original Message------
>> From:"Laurence Marks"<L-marks at northwestern.edu>
>> To:"A Mailing list for WIEN2k users"<wien at zeus.theochem.tuwien.ac.at>
>> Cc:
>> Subject:Re: [Wien] error "setrlimit(): Invalid argument"
>> Date:07/29/2011 10:24:49 AM(-0500)
>>>Please check your version of the two attached files against what you
>>>have in SRC_lapw0,1,2 . (I think the attached is the latest version,
>>>but please also check the Wien2k site, just one of SRC_lapw0.) If they
>>>are different, copy what you have "somewhere" then replace them in
>>>SRC_lapw0 (as a test), recompile and just run "x lapw0 -p".
>>>
>>>This may be one of many things, but it is related to these files:
>>>a) Your C compiler is strange (which did you use, icc or gcc?)
>>>b) Your sysadmin has prevented you as a user from making the call
>>>
>>>At worst, comment out the w2k_extend_limits() subroutine. Maybe your
>>>sysadmin can help work out what is appropriate for your system --
>>>unfortunately C is not as standard as fortran. (We can then patch
>>>around this in the future.)
>>>
>>>Quick explanation. If you look back in the mailing list, you will find
>>>about once a week, an error/email associated with ulimit. This got
>>>worse with openmpi since in this code there is no way to set the
>>>stacksize. This subroutine does it for you, but is not working on your
>>>system for some reason. There was a similar bug on a Mac which I
>>>believe is cured with this version.
>>>
>>>On Fri, Jul 29, 2011 at 9:23 AM, Dr Qiwen  YAO <Yao.Qiwen at nims.go.jp> wrote:
>>>> Dear Wien2k users,
>>>>
>>>> I am now facing a new but related error to the previous one: Now the error says: setrlimit(): Invalid argument   stop error
>>>> My OS: Cluster, PBS Pro (SGI ProPack6SP2 AltixXE 250 2CPU/8core 32GB Memory), Suse Enterprise Server 10 (x86-64), I am using ssh login.
>>>>
>>>> After I have the supercell struct file in place and init_lapw, in the working directory I do "run_lapw -p -ec 0.0001"  - then instantly I got the above mentioned error, the lapw does not seem to start running at all.
>>>>
>>>> A "ls -l *.error" gives four error files but all of them are of size of zero.
>>>>
>>>> Originally I traced the similar error to the Stack size setting problem, and with Professor Marks' help I had commented out the line "ulimit -s unlimit" out from my .bashrc file, and I have logout the cluster and relogin more than twice.
>>>>
>>>> I search the email achieve without result, I googled it but it points to me the same place as I previously had (Stack Size setting issue - but that is no an issue at lest in the .bashrc file anymore) - Now I don't know where to go from here.
>>>>
>>>> Any help/hint would be much appreciated.
>>>>
>>>> Thank you very much.
>>>>
>>>> Kind regards,
>>>> Qiwen
>>>>
>>>> ===========
>>>>
>>>> ------Original Message------
>>>> From:"Laurence Marks"<L-marks at northwestern.edu>
>>>> To:"A Mailing list for WIEN2k users"<wien at zeus.theochem.tuwien.ac.at>
>>>> Cc:
>>>> Subject:Re: [Wien] commenting out the line "ulimit -s unlimit" from .bashrc?
>>>> Date:07/29/2011 06:14:14 AM(-0500)
>>>>>Delete the line -- if he has already set it as unlimited.
>>>>>
>>>>>On Fri, Jul 29, 2011 at 5:19 AM, Dr Qiwen  YAO <Yao.Qiwen at nims.go.jp> wrote:
>>>>>> Dear Wien2k users,
>>>>>> I've come across an issue when running WIEN2k 11 in a cluster (PBS Pro, SUSE Linux Enterprise Server 10 (x86_64)) for the Stack size setting permission: It was the system policy that a user is not allowed to set the stack size in anyway.  That is:
>>>>>> "ulimit -s whateveramount" is not allowed - so for the line inserted in my .bashrc file by WIEN, how do I go around this problem? The system support is not changing anything for this in his side (but he said that "the stack size is unlimited on computer nodes when users run jobs"). So can I just delete this line from the .bashrc file? Would that affect the WIEN2k execution?
>>>>>>
>>>>>> Thank you,
>>>>>>
>>>>>> Qiwen Yao
>>>>>>
>>>>>> **********************************************************
>>>>>>
>>>>>> Dr QiWen YAO
>>>>>>
>>>>>> JSPS Fellow
>>>>>> Multifunctional Materials Group
>>>>>> Optical and Electronic Materials Unit
>>>>>> Environment and Energy Materials Research Division
>>>>>>
>>>>>> National Institute for Materials Science
>>>>>>
>>>>>> 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
>>>>>> Phone: +81-29-851-3354, ext. no. 6482, Fax: +81-29-859-2501
>>>>>>
>>>>>> **********************************************************
>>>>>>
>>>>>> _______________________________________________
>>>>>> Wien mailing list
>>>>>> Wien at zeus.theochem.tuwien.ac.at
>>>>>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Laurence Marks
>>>>>Department of Materials Science and Engineering
>>>>>MSE Rm 2036 Cook Hall
>>>>>2220 N Campus Drive
>>>>>Northwestern University
>>>>>Evanston, IL 60208, USA
>>>>>Tel: (847) 491-3996 Fax: (847) 491-7820
>>>>>email: L-marks at northwestern dot edu
>>>>>Web: www.numis.northwestern.edu
>>>>>Chair, Commission on Electron Crystallography of IUCR
>>>>>www.numis.northwestern.edu/
>>>>>Research is to see what everybody else has seen, and to think what
>>>>>nobody else has thought
>>>>>Albert Szent-Gyorgi
>>>>>_______________________________________________
>>>>>Wien mailing list
>>>>>Wien at zeus.theochem.tuwien.ac.at
>>>>>http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>>
>>>> **********************************************************
>>>>
>>>> Dr QiWen YAO
>>>>
>>>> JSPS Fellow
>>>> Multifunctional Materials Group
>>>> Optical and Electronic Materials Unit
>>>> Environment and Energy Materials Research Division
>>>>
>>>> National Institute for Materials Science
>>>>
>>>> 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
>>>> Phone: +81-29-851-3354, ext. no. 6482, Fax: +81-29-859-2501
>>>>
>>>> **********************************************************
>>>>
>>>> _______________________________________________
>>>> Wien mailing list
>>>> Wien at zeus.theochem.tuwien.ac.at
>>>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>>
>>>
>>>
>>>
>>>--
>>>Laurence Marks
>>>Department of Materials Science and Engineering
>>>MSE Rm 2036 Cook Hall
>>>2220 N Campus Drive
>>>Northwestern University
>>>Evanston, IL 60208, USA
>>>Tel: (847) 491-3996 Fax: (847) 491-7820
>>>email: L-marks at northwestern dot edu
>>>Web: www.numis.northwestern.edu
>>>Chair, Commission on Electron Crystallography of IUCR
>>>www.numis.northwestern.edu/
>>>Research is to see what everybody else has seen, and to think what
>>>nobody else has thought
>>>Albert Szent-Gyorgi
>>>
>>>
>>>----------------------------------------------------------------------
>>>
>>>_______________________________________________
>>>Wien mailing list
>>>Wien at zeus.theochem.tuwien.ac.at
>>>http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>
>>> << W2kutils.c >>
>>> << W2kutils.h >>
>>
>> **********************************************************
>>
>> Dr QiWen YAO
>>
>> JSPS Fellow
>> Multifunctional Materials Group
>> Optical and Electronic Materials Unit
>> Environment and Energy Materials Research Division
>>
>> National Institute for Materials Science
>>
>> 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
>> Phone: +81-29-851-3354, ext. no. 6482, Fax: +81-29-859-2501
>>
>> **********************************************************
>>
>> _______________________________________________
>> Wien mailing list
>> Wien at zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>
>
>
>
>-- 
>Laurence Marks
>Department of Materials Science and Engineering
>MSE Rm 2036 Cook Hall
>2220 N Campus Drive
>Northwestern University
>Evanston, IL 60208, USA
>Tel: (847) 491-3996 Fax: (847) 491-7820
>email: L-marks at northwestern dot edu
>Web: www.numis.northwestern.edu
>Chair, Commission on Electron Crystallography of IUCR
>www.numis.northwestern.edu/
>Research is to see what everybody else has seen, and to think what
>nobody else has thought
>Albert Szent-Gyorgi
>_______________________________________________
>Wien mailing list
>Wien at zeus.theochem.tuwien.ac.at
>http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

**********************************************************

Dr QiWen YAO

JSPS Fellow
Multifunctional Materials Group
Optical and Electronic Materials Unit
Environment and Energy Materials Research Division

National Institute for Materials Science

1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
Phone: +81-29-851-3354, ext. no. 6482, Fax: +81-29-859-2501

**********************************************************