[Wien] I still have problem with wienk in parallel mode

Laurence Marks L-marks at northwestern.edu
Sat Jan 7 02:11:40 CET 2012


A guess, which is the best we can do at the moment. See if you can ssh into
the nodes without the ".local" at the end and if you can then create a
.machines file without the .local and try x lapw1 -c -p.

If you have access to the dns files also try aliasing the nodes to, for
instance, c0, c1 etc and use these in .machines.

The fact that your .machine1 file is empty is wrong, and suggests something
has gone wrong. It may be because of the "." in your names leading to some
sed problems, but this is just my guess.

---------------------------
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu 1-847-491-3996
"Research is to see what everybody else has seen, and to think what nobody
else has thought"
Albert Szent-Gyorgi
 On Jan 6, 2012 2:58 PM, "Nilton" <nilton.dantas at gmail.com> wrote:

> Dear fellows,
> thanks for the answers.
>
>
> 2012/1/2 Peter Blaha <pblaha at theochem.tuwien.ac.at>
>
>>  model name      : Intel(R) Xeon(R) CPU           X3430  @ 2.40GHz
>>> stepping        : 5
>>> cpu MHz         : 1197.000
>>>
>>
>> Are you running at half speed ???
>> At least on my machines it would indicate the expected cpu MHz of 2400
>
>
> the machine was idle when I got this information. If I repeat with lapw1
> submited the speed goes to double.In principle this message should give you
> some clues.
>
>
>> The mpirun command you listed is incomplete and wrong. You said you have:
>>
>> setenv WIEN_MPIRUN "mpirun -v -np _NP_ -machinefile _HOSTS_ _EXEC_"
>>
>> I think  the "-v" is wrong ??
>>
> It is correct. it means verbose mode as you can see here
>
>
> ---------------------------------------------------------------------------------------------------------------------------------------
> [nilton at bodesking case]$ mpirun -v -np 4 -machinefile .machines
> /home/nilton/wien2k/lapw1c_mpi lapw1.def
> running /home/nilton/wien2k/lapw1c_mpi on 4 LINUX ch_p4 processors
> Created
> /home/nilton/pesquisa/dftCalc/calWien/gaxtl1-xas/075/case/case/PI13830
>
> -------------------------------------------------------------------------------------------------------------------------------------
> I am using .machines because .machine1 is empty.
> I tried this command and it works very well, as you can see in the output
> of top command
>
> --------------------------------------------------------lapw1c_mpi runnig
> in bodeking
> [nilton at bodesking ~]$ top
>
> top - 17:41:40 up  2:31,  6 users,  load average: 0.42, 0.99, 1.91
> Tasks: 201 total,   2 running, 199 sleeping,   0 stopped,   0 zombie
> Cpu(s):  8.7%us,  1.1%sy,  0.0%ni, 85.8%id,  0.0%wa,  0.1%hi,  4.4%si,
> 0.0%st
> Mem:  12250640k total,  1639948k used, 10610692k free,   137816k buffers
> Swap:  8193140k total,        0k used,  8193140k free,   879624k cached
>
>   PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+
> COMMAND
> 14711 nilton    16   0 47540  22m 3220 R 35.2  0.2   0:13.03 lapw1c_mpi
>
>
>
> ---------------------------------------------------------------------------------------------------------------
>
>
> -----------------------lapw1c_mpi running in comput-0-0------------
> [nilton at compute-0-1 ~]$ top
>
> top - 17:42:38 up 4 days,  3:34,  2 users,  load average: 0.41, 0.91, 2.08
> Tasks: 115 total,   2 running, 113 sleeping,   0 stopped,   0 zombie
> Cpu(s):  6.2%us,  0.7%sy,  0.0%ni, 88.2%id,  0.0%wa,  0.6%hi,  4.3%si,
> 0.0%st
> Mem:   6058240k total,  3244748k used,  2813492k free,   207132k buffers
> Swap:  1020116k total,        0k used,  1020116k free,  2881356k cached
>
>   PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+
> COMMAND
> 17044 nilton    16   0 65288  34m 3204 R 29.3  0.6   0:30.33 lapw1c_mpi
>
>
> and by the way the time program is instaled as you can see below
>
> [nilton at bodesking case]$ time
>
> real    0m0.000s
> user    0m0.000s
> sys     0m0.000s
>
> Nilton
> --
> Nilton S. Dantas
> Universidade Estadual de Feira de Santana
> Departamento de Ciências Exatas
> Área de Informática
> Av. Transnordestina, S/N, Bairro Novo Horizonte
> CEP 44036900 - Feira de Santana, Bahia, Brasil
> Tel./Fax +55 75 31618086
> http://www2.ecomp.uefs.br/ <http://www.uefs.br/portal>
>
>
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>
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