[Wien] a question about the atomic coordinates in file of case.outputs
Zhou Bing
umbingz at isl.ac.cn
Tue Jul 3 03:41:11 CEST 2012
Dear all,
I try to understand how the atomic coordinates in crystallographic system are transformed into the orthogonal system by WIEN2k.
I am wondering if the atomic coordinates are transformed by WIEN2k using the following equations:
In the general case with angles that can be different from 90 degrees:
- the a-axis is depicted on the x-axis.
- The b-axis lies in the xy-plane (with the angle gamma between the a- and b-axis).
- The c-axis points towards you.
So x-coordinate is easy to calculate, the z-coordinate is complicated!
Here in total: (x1,y,1,z1) is crystal coordinates, (x2,y2,z2) is orthogonal coordinates.
x2 = x1 * a
y2 = x1 * b * cos(gamma) + y1 * b * sin(gamma) [when gamma == 90 deg -> y2 = y1 * b]
z2 = x1 * c * cos(beta) + y1 * c * P + z1 * c * Q
with: P = (cos(alpha) - cos(beta) * cos(gamma)) / sin(gamma)
and: Q = sqrt(sin^2(beta) - P^2)
Thank you in advance!
Best wishes,
Bing
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