[Wien] parallel segmentation fault

[Luis Ogando]

Hi Arturo,

   Actually, Prof. Marks were right !!  :)
   All the best,
                    Luis




2013/2/8 Arturo <artginer at bifi.es>

>  Hi Luis,
>
> You were right. The problem was in the parallel options. I had to change
> this library and also recompile fftw3_mpi library with the correct openmpi
> compiler.
>
> Regards!!
> Arturo
>
> El 06/02/13 14:04, Luis Ogando escribió:
>
> Hi Arturo,
>
>     You have to check the compilation options for the parallel version
> (not the serial one) and change    -lmkl_blacs_lp64    by
>  -lmkl_blacs_openmpi_lp64    in the    RP_LIB(SCALAPACK+PBLAS):    line.
>     Good luck,
>                 Luis
>
>
>
>
>
> 2013/2/6 Arturo <artginer at bifi.es>
>
>>  Hi Luis,
>>
>> First of all, thanks for help!!
>>
>> In the first suggestion, how can I know if I'm using this library?
>> In the compilations options, I don't use that library. I used:
>>
>>     -lmkl_lapack95_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core
>> -openmp -lpthread
>>
>> So the solution you suggest is to add the library mkl_blacs_openmpi_lp64
>> to this line?
>>
>> Regards
>>
>>
>> El 06/02/13 13:32, Luis Ogando escribió:
>>
>> Hi Arturo,
>>
>>      Try
>> http://zeus.theochem.tuwien.ac.at/pipermail/wien/2012-July/017207.html
>>
>>      The first suggestion given by Prof. Marks solved a similar problem
>> to me.
>>     All the best,
>>                   Luis
>>
>>
>>
>>
>>
>>  2013/2/6 Arturo <artginer at bifi.es>
>>
>>>  Hi,
>>>
>>> We are trying  to run wien2k v12, compiled with openmpi 1.5.4 and intel
>>> compilers 12.1 but it gives us a segmentations fault while executing the
>>> following:
>>>
>>> mpirun  -np 4  /cm/shared/apps/WIEN2k_12/lapw1_mpi  uplapw1_1.defcat
>>>
>>> The errors are these:
>>>
>>> w2k_dispatch_signal(): received: Segmentation fault
>>> w2k_dispatch_signal(): received: Segmentation fault
>>> w2k_dispatch_signal(): received: Segmentation fault
>>> w2k_dispatch_signal(): received: Segmentation fault
>>>
>>> --------------------------------------------------------------------------
>>> MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
>>> with errorcode 91.
>>>
>>> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
>>> You may or may not see output from other processes, depending on
>>> exactly when Open MPI kills them.
>>>
>>> --------------------------------------------------------------------------
>>>  Child id           0 SIGSEGV, contact developers
>>>  Child id           1 SIGSEGV, contact developers
>>>  Child id           2 SIGSEGV, contact developers
>>>  Child id           3 SIGSEGV, contact developers
>>>
>>> --------------------------------------------------------------------------
>>> mpirun has exited due to process rank 2 with PID 25559 on
>>> node node042 exiting without calling "finalize". This may
>>> have caused other processes in the application to be
>>> terminated by signals sent by mpirun (as reported here).
>>>
>>> --------------------------------------------------------------------------
>>> [node042:25556] 3 more processes have sent help message help-mpi-api.txt
>>> / mpi-abort
>>> [node042:25556] Set MCA parameter "orte_base_help_aggregate" to 0 to see
>>> all help / error messages
>>>
>>> And the ulimit -s is unlimited.
>>>
>>> Could you help us executing wien2k in parallel mode? Sequential is
>>> working fine.
>>>
>>> Best Regards
>>> Arturo
>>>
>>>
>>> _______________________________________________
>>> Wien mailing list
>>> Wien at zeus.theochem.tuwien.ac.at
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>>>
>>>
>>
>>
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