[Wien] running k-point parallel across nodes
Peter Blaha
pblaha at theochem.tuwien.ac.at
Thu Oct 17 14:58:37 CEST 2013
Of course you also have to have a common (NFS) filesystem.
This means, your data have to be in a certain directory, which must be
exported on the server and mounted on the remote node under the same
node (with rwx permissions)
test:
pwd
export PWD=`cwd` (if not already set)
ssh nodeXX "cd $PWD;ls"
Then you need passwordless login, and (as you now have done ?) you must
make sure that ssh transmits/accepts your current environment.
> To run k-point parallel across different nodes, is it enough to simply
> have w2k installed on all the nodes along with pw-less ssh? I have
> pw-less ssh working among the nodes, but when I try to run another
> kpoint on another node, the shell cannot find the executables:
>
> $ x lapw1 -p
> starting parallel lapw1 at Wed Oct 16 10:48:53 PDT 2013
> -> starting parallel LAPW1 jobs at Wed Oct 16 10:48:53 PDT 2013
> running LAPW1 in parallel mode (using .machines)
> 2 number_of_parallel_jobs
> [1] 4653272
> [2] 3605022
> ksh: lapw1c: not found.
> ksh: fixerror_lapw: not found.
> ksh: /home/oliver/data/wiendir/benchmark/test_case: not found.
> ksh: lapw1c: not found.
> ksh: fixerror_lapw: not found.
> [2] - Done ( ( $remote $machine[$p] ...
> [1] + Done ( ( $remote $machine[$p] ...
> stblade01(1) 0.000u 0.000s 0.1 0.00% 0+0k 0+0io 0pf+0w
> stblade02(1) 0.000u 0.000s 0 0.00% 0+0k 0+0io 0pf+0w
> test_case.scf1_1: A file or directory in the path name does not exist.
> Summary of lapw1para:
> stblade01 k=1 user=0 wallclock=6
> stblade02 k=1 user=0 wallclock=0
> 0.1u 0.1s 0:02 8% 0+0k 0+0io 0pf+0w
>
> .machines:
> 1:stblade01
> 1:stblade02
>
> Sincerely,
>
> Oliver
>
>
>
>
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--
P.Blaha
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Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: blaha at theochem.tuwien.ac.at WWW:
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