[Wien] Error in job submission
Francisco Garcia
garcia.ff.000 at gmail.com
Thu Apr 3 18:02:53 CEST 2014
Dear users,
I am trying to run WIEN2k in a bash environment. My job script is shown
below.
#!/bin/bash -f
#SBATCH -J test1
#SBATCH -o test1.o%j
#SBATCH -N 2
#SBATCH -n 16
#SBATCH -p normal
#SBATCH -t 2:00:00
rm -fr .machines
scontrol show hostnames "$SLURM_JOB_NODELIST" | sort -u > machh
sed -e '1,$s/^/1:/' machh > .machines
echo 'granularity:1' >>.machines
echo 'extrafine:1' >>.machines
mkdir /scratch/"$SLURM_JOB_NAME"."$SLURM_JOB_ID"
export dir=/scratch/"$SLURM_JOB_NAME"."$SLURM_JOB_ID"
export SCRATCH=/scratch/"$SLURM_JOB_NAME"."$SLURM_JOB_ID"
runsp_lapw -ec 0.00001 -cc 0.0001 -i 100 -p
rm -rf $dir
However I always end up with the error below. I tried changing environment
from bash to csh upon login but the problem still persists. The .machines
file looks fine.
LAPW0 END
bash: lapw1: command not found
bash: fixerror_lapw: command not found
Warning: Permanently added 'c559-803,129.114.91.5' (RSA) to the list of
known hosts.^M
bash: lapw1: command not found
bash: fixerror_lapw: command not found
bulk.scf1up_1: No such file or directory.
Illegal division by zero at /work/WIEN2k_12/bashtime2csh.pl_lapw line 42.
bash: lapw1: command not found
bash: fixerror_lapw: command not found
bulk.scf1dn_1: No such file or directory.
FERMI - Error
cp: cannot stat `.in.tmp': No such file or directory
> stop error
Thank you.
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