[Wien] regarding hanging of job and mBJ

Dr. K. C. Bhamu kcbhamu85 at gmail.com
Tue Oct 25 19:10:24 CEST 2016


One additional information. I observed that this is happening at the time
when I logged in my cluster.

I logged at 8:00P.M. and I just checked the status and the job have been
suspended at 8:00 P.M.

Is it a cause of suspension?


------------------------------------------------
Dr. K. C. Bhamu
(UGC-Dr. D. S. Kothari Postdoc Fellow)
Department of Physics
Goa University, Goa-403 206
India
Mob. No.  +91-9975238952

On Tue, Oct 25, 2016 at 8:46 PM, Laurence Marks <L-marks at northwestern.edu>
wrote:

> Are you using mpi or not? Sometimes mpi can hang for reasons I have
> never tracked down; there is also a "bug" in some versions of ssh that
> can lead to zombie processes. You can sometimes use a tool such as top
> or ganglia to see this.
>
> On Tue, Oct 25, 2016 at 10:05 AM, tran at theochem.tuwien.ac.at
> <tran at theochem.tuwien.ac.at> wrote:
> > You are using the most recent subroutine. With the older version, lapw0
> > could hang in rare cases. So, I don't understand why lapw0 is hanging
> > in your case.
> >
> > On Tuesday 2016-10-25 14:42, Dr. K. C. Bhamu wrote:
> >
> >>Date: Tue, 25 Oct 2016 14:42:08
> >>From: Dr. K. C. Bhamu <kcbhamu85 at gmail.com>
> >>Reply-To: A Mailing list for WIEN2k users <wien at zeus.theochem.tuwien.ac.
> at>
> >>To: A Mailing list for WIEN2k users <wien at zeus.theochem.tuwien.ac.at>
> >>Subject: Re: [Wien] regarding hanging of job and mBJ
> >>
> >>Please find enclosed brj.f file.
> >>
> >>Sincerely
> >>------------------------------------------------
> >>Dr. K. C. Bhamu
> >>(UGC-Dr. D. S. Kothari Postdoc Fellow)
> >>Department of Physics
> >>Goa University, Goa-403 206
> >>India
> >>Mob. No.  +91-9975238952
> >>
> >>On Tue, Oct 25, 2016 at 5:04 PM, <tran at theochem.tuwien.ac.at> wrote:
> >>      In this case I don't understand why lapw0 is hanging. Can you
> >>      send the subroutine brj.f?
> >>
> >>      On Tuesday 2016-10-25 12:18, Dr. K. C. Bhamu wrote:
> >>
> >>            Date: Tue, 25 Oct 2016 12:18:41
> >>            From: Dr. K. C. Bhamu <kcbhamu85 at gmail.com>
> >>            Reply-To: A Mailing list for WIEN2k users
> >>            <wien at zeus.theochem.tuwien.ac.at>
> >>            To: A Mailing list for WIEN2k users
> >>            <wien at zeus.theochem.tuwien.ac.at>
> >>            Subject: Re: [Wien] regarding hanging of job and mBJ
> >>
> >>
> >>                 Probably your are using an old version of
> >>            WIEN2k with the old
> >>                 scheme
> >>                 to find the solution of the nonlinear equation
> >>            in brj.f. You
> >>                 should get
> >>                 the new version brj.f which avoids such
> >>            problems.
> >>
> >>
> >>            No, I am using latest version of Wien2k with
> >>            mkl+ifort.
> >>            It is not for all case. It happens for few cases and
> >>            it doesn't matter that
> >>            which case I am running.
> >>
> >>                 _______________________________________________
> >>                 Wien mailing list
> >>                 Wien at zeus.theochem.tuwien.ac.at
> >>
> >>             https://urldefense.proofpoint.com/v2/url?u=http-3A__zeus.
> theochem.tuwien.ac.at_mailman_listinfo_wien&d=CwIDaQ&c=
> yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_
> T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=CDG_
> DYKUx13PsYrh9eJG9XMEZLoJcxFNBRdEglc4FPM&s=o1Tj0F8Q9rbQFXAnN9oBfdzxg6LIW5
> xwcznSKL2MDLw&e=
> >>                 SEARCH the MAILING-LIST at:
> >>
> >>             https://urldefense.proofpoint.com/v2/url?u=http-3A__www.
> mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_
> index.html&d=CwIDaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_
> T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=CDG_
> DYKUx13PsYrh9eJG9XMEZLoJcxFNBRdEglc4FPM&s=8szz63kX7OITc3zQvb0Jh9SMWRpJZ0
> EFzTcAxcSXukI&e=
> >>
> >>
> >>
> >>
> >>      _______________________________________________
> >>      Wien mailing list
> >>      Wien at zeus.theochem.tuwien.ac.at
> >>      https://urldefense.proofpoint.com/v2/url?u=http-3A__zeus.
> theochem.tuwien.ac.at_mailman_listinfo_wien&d=CwIDaQ&c=
> yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_
> T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=CDG_
> DYKUx13PsYrh9eJG9XMEZLoJcxFNBRdEglc4FPM&s=o1Tj0F8Q9rbQFXAnN9oBfdzxg6LIW5
> xwcznSKL2MDLw&e=
> >>      SEARCH the MAILING-LIST at:
> >>      https://urldefense.proofpoint.com/v2/url?u=http-3A__www.
> mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_
> index.html&d=CwIDaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_
> T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=CDG_
> DYKUx13PsYrh9eJG9XMEZLoJcxFNBRdEglc4FPM&s=8szz63kX7OITc3zQvb0Jh9SMWRpJZ0
> EFzTcAxcSXukI&e=
> >>
> >>
> >>
> >>
>
>
>
> --
> Professor Laurence Marks
> "Research is to see what everybody else has seen, and to think what
> nobody else has thought", Albert Szent-Gyorgi
> www.numis.northwestern.edu ; Corrosion in 4D:
> MURI4D.numis.northwestern.edu
> Partner of the CFW 100% program for gender equity, www.cfw.org/100-percent
> Co-Editor, Acta Cryst A
> _______________________________________________
> Wien mailing list
> Wien at zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:  http://www.mail-archive.com/
> wien at zeus.theochem.tuwien.ac.at/index.html
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20161025/859c4d02/attachment.html>


More information about the Wien mailing list