[Wien] Terminal strange output when running at different nodes

Laurence Marks L-marks at northwestern.edu
Sun May 28 16:04:34 CEST 2017


It sounds as if that node is set to debug mode, e.g.
https://www.tecmint.com/enable-shell-debug-mode-linux/

You can probably track down what is going on using the "env" command
-- but as Fabien says it should not matter. If it ain't broke don't
fix it.

On Sun, May 28, 2017 at 8:38 AM, tran at theochem.tuwien.ac.at
<tran at theochem.tuwien.ac.at> wrote:
> This is the same with our local cluster here in Vienna. One of the
> nodes gives the same large output. This is probably due to
> some Linux setting (maybe the Linux version) which is not the same
> on all nodes. Anyway, this is not a
> problem since this does not affect the results of the calculation.
>
> FT
>
> On Sunday 2017-05-28 02:31, tong wei wrote:
>
>>Date: Sun, 28 May 2017 02:31:37
>>From: tong wei <weitongwei at hotmail.com>
>>Reply-To: A Mailing list for WIEN2k users <wien at zeus.theochem.tuwien.ac.at>
>>To: wien <wien at zeus.theochem.tuwien.ac.at>
>>Subject: [Wien] Terminal strange output when running at different nodes
>>
>> *   I am running wien version 16.1 on a machine of type x86 with operating system CentOS 6.7/6.8, fortran compiler ifort version 12.1.5 and
>>    math libraries intel mkl.
>>I am running the same program at different nodes within a cluster  (NFS and NIS configured). One node gives a clean output on the terminal,
>>however the other node give a complex output on the terminal.  I don't know what's wrong.  These two nodes seem to have the same
>>configuration. Wien2k program and User's home directory are shared from the master node.
>>
>>**One node gives a clean output on the terminal:***
>>----------------------
>>[weitong at mag02 LIO]$ runsp -p -NI -cc 0.0001 -i 1
>> LAPW0 END
>> LAPW1 END
>> LAPW1 END
>>LAPW2 - FERMI; weights written
>> LAPW2 END
>> SUMPARA END
>>LAPW2 - FERMI; weights written
>> LAPW2 END
>> SUMPARA END
>> CORE  END
>> CORE  END
>> MIXER END
>>-----------------------------------------------
>>
>>
>>***However the other node give the following output on the terminal:***
>>---------------------------------------------
>>[weitong at mag03 LIO]$ runsp -p -NI -cc 0.0001 -i 1
>> LAPW0 END
>>13.010u 0.091s 0:14.06 93.1% 0+0k 24344+11112io 4pf+0w
>>[1]  + 151857 Running                       ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop
>>"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp
>>1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr <STDIN>" )
>> LAPW1 END
>>[1]    Done                          ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop"; rm -
>>f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp1_$loop
>> >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr <STDIN>" )
>>0.043u 0.116s 5:56.88 0.0% 0+0k 352+400io 8pf+0w
>>[1]  + 152282 Running                       ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop
>>"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp
>>1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr <STDIN>" )
>> LAPW1 END
>>[1]    Done                          ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop"; rm -
>>f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp1_$loop
>> >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr <STDIN>" )
>>0.045u 0.120s 5:59.10 0.0% 0+0k 0+392io 0pf+0w
>>LAPW2 - FERMI; weights written
>>[1]  + 152671 Running                       ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_${loop}.def $loop;fixerror_lapw ${def
>>}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout2_$loop; if ( -f .stdout2_$loop ) bashtime2csh.pl_lapw .stdout2_$loop > .temp2_$loop; grep \
>>% .temp2_$loop >> .time2_$loop; grep -v \% .temp2_$loop | perl -e "print stderr <STDIN>" )
>> LAPW2 END
>>[1]    Done                          ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_${loop}.def $loop;fixerror_lapw ${def}_$loop
>>"; rm -f .lock_$lockfile[$p] ) >& .stdout2_$loop; if ( -f .stdout2_$loop ) bashtime2csh.pl_lapw .stdout2_$loop > .temp2_$loop; grep \% .temp
>>2_$loop >> .time2_$loop; grep -v \% .temp2_$loop | perl -e "print stderr <STDIN>" )
>> SUMPARA END
>>0.367u 0.090s 0:22.62 1.9% 0+0k 976+6784io 1pf+0w
>>LAPW2 - FERMI; weights written
>>[1]  + 152914 Running                       ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_${loop}.def $loop;fixerror_lapw ${def
>>}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout2_$loop; if ( -f .stdout2_$loop ) bashtime2csh.pl_lapw .stdout2_$loop > .temp2_$loop; grep \
>>% .temp2_$loop >> .time2_$loop; grep -v \% .temp2_$loop | perl -e "print stderr <STDIN>" )
>> LAPW2 END
>>[1]    Done                          ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_${loop}.def $loop;fixerror_lapw ${def}_$loop
>>"; rm -f .lock_$lockfile[$p] ) >& .stdout2_$loop; if ( -f .stdout2_$loop ) bashtime2csh.pl_lapw .stdout2_$loop > .temp2_$loop; grep \% .temp
>>2_$loop >> .time2_$loop; grep -v \% .temp2_$loop | perl -e "print stderr <STDIN>" )
>> SUMPARA END
>>0.366u 0.086s 0:22.31 1.9% 0+0k 8+6792io 0pf+0w
>> CORE  END
>>0.034u 0.002s 0:00.34 8.8% 0+0k 1112+680io 1pf+0w
>> CORE  END
>>0.033u 0.001s 0:00.29 10.3% 0+0k 0+680io 0pf+0w
>> MIXER END
>>0.212u 0.022s 0:01.19 19.3% 0+0k 7496+23448io 0pf+0w
>>---------------------------------------------
>>
>>***This is the .machines file***
>>-----------
>>1:mag02
>>1:mag02
>>granularity:1
>>extrafine:1
>>---------
>>OR
>>-----------
>>1:mag03
>>1:mag03
>>granularity:1
>>extrafine:1
>>---------
>>
>>_____________________________________________________________________________________________________________________________________________
>>weitongwei at hotmail.com
>>
>>



-- 
Professor Laurence Marks
"Research is to see what everybody else has seen, and to think what
nobody else has thought", Albert Szent-Gyorgi
www.numis.northwestern.edu ; Corrosion in 4D: MURI4D.numis.northwestern.edu
Partner of the CFW 100% program for gender equity, www.cfw.org/100-percent
Co-Editor, Acta Cryst A


More information about the Wien mailing list