[Wien] PBS run

[Gavin Abo]

It look like something is wrong with this line [ 
https://stackoverflow.com/questions/26816605/awk-fatal-cannot-open-file-for-reading-no-such-file-or-directory 
]:

awk '{print "1:"$1":1"}' $PBS_NODEFILE >>.machines

Maybe quotes are needed around the $PBS_NODEFILE:

awk '{print "1:"$1":1"}' "$PBS_NODEFILE" >>.machines

On 9/8/2017 2:20 AM, Subrata Jana wrote:
> Hi Gavin Abo,
> I change my job script as follows:
>
> #################################
> #!/bin/bash
> #PBS -N wien2k
> #PBS -o out.log
> #PBS -j oe
> #PBS -l nodes=1:ppn=1
>
> # Load Intel environment
> source 
> /apps/intel_2016_u2/compilers_and_libraries_2016.2.181/linux/bin/compilervars.sh 
> intel64
>
> cd /home/sjana/WIEN2k/PBE/C_pbe
> rm -f .machines
> echo '#' > .machines
> *echo -n 'lapw0:' > .machines*
> echo 'granularity:1' >>.machines
> awk '{print "1:"$1":1"}' $PBS_NODEFILE >>.machines
> echo 'extrafine:1' >>.machines
> /home/sjana/WIEN2k_14.2/run_lapw -p -i 40 -ec .0001 -I
> ###########################################
>
> Now the out.log
>
> awk: cmd. line:1: fatal: cannot open file `-np' for reading (No such 
> file or directory)
> ssh: Could not resolve hostname granularity: Name or service not known^M
>
> >   stop error
>
> Regards,
> S. Jana
>
>
>
>
>
>
>
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