[Wien] error in running .machines file

venkatesh chandragiri venkyphysicsiitm at gmail.com
Fri Jun 15 11:03:36 CEST 2018


Dear Prof. Laurence Marks,

thanks for your reply. As pointed in my mail I kept all the variable paths
to bashrc file as well as in the jobscript file. Also I did the "ldd
lapw1c_mpi"

the output is ==========

[renwei at ln3 ~/venky/soft/wien2k]$ ldd lapw1c_mpi
        linux-vdso.so.1 =>  (0x00007ffdad1ea000)
        libfftw3_mpi.so.3 =>
/THFS/home/renwei/venky/soft/fftw/lib/libfftw3_mpi.so.3 (0x00002b621871d000)
        libmkl_scalapack_lp64.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_scalapack_lp64.so
(0x00002b6218934000)
        libmkl_blacs_intelmpi_lp64.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
(0x00002b621920b000)
        libfftw3.so.3 =>
/THFS/home/renwei/venky/soft/fftw/lib/libfftw3.so.3 (0x00002b6219447000)
        libmkl_intel_lp64.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so
(0x00002b6219753000)
        libmkl_intel_thread.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_intel_thread.so
(0x00002b6219ea2000)
        libmkl_core.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_core.so
(0x00002b621aec1000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003cbce00000)
*        libmpifort.so.12 =>
/opt/intel/impi/5.0.2.044/intel64/lib/libmpifort.so.12
<http://5.0.2.044/intel64/lib/libmpifort.so.12> (0x00002b621c5d8000)*
        libmpi.so.12 => /opt/intel/impi/5.0.2.044/intel64/lib/libmpi.so.12
(0x00002b621c861000)
        libdl.so.2 => /lib64/libdl.so.2 (0x0000003cbca00000)
        librt.so.1 => /lib64/librt.so.1 (0x0000003cbd600000)
        libm.so.6 => /lib64/libm.so.6 (0x0000003cbc200000)
        libiomp5.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so
(0x00002b621cfd5000)
        libc.so.6 => /lib64/libc.so.6 (0x0000003cbc600000)
        libgcc_s.so.1 =>
/THFS/home/sh-hzw2/software/Matlab2014a//sys/os/glnxa64/libgcc_s.so.1
(0x00002b621d2f1000)
        libimf.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libimf.so
(0x00002b621d506000)
        libsvml.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libsvml.so
(0x00002b621d9ca000)
        libirng.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libirng.so
(0x00002b621e5c5000)
        libintlc.so.5 =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libintlc.so.5
(0x00002b621e7cc000)
        /lib64/ld-linux-x86-64.so.2 (0x0000003cbbe00000)

=====================

As I highlighted above *libmpifort.so.*12 has well defined path. do you
have any comment on this.


Further, you are pointed out that "the shared libraries are not present on
the computer you are connecting to via ssh and/or the path has not been
exported ". I already copied the key in the
id_rsa.pub file to authorized_keys file (both are in the same server where
wien2k installed)  to make the password free ssh.

[renwei at ln3 ~/.ssh]$ ls -la
total 32
drwx------  2 renwei renwei  4096 Jun 15 04:10 .
drwx------ 44 renwei renwei  4096 Jun 15 04:10 ..
-rw-------  1 renwei renwei  1200 May 19 13:46 authorized_keys
-rw-------  1 renwei renwei  1675 May 17 13:44 id_rsa
-rw-r--r--  1 renwei renwei   392 May 17 13:44 id_rsa.pub
-rw-r--r--  1 renwei renwei 11641 Jun 14 10:45 known_hosts

do I need to change the permission between the authorized_keys & id_rsa.pub
...?

thanks

venkatesh
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