[Wien] error in running .machines file
venkatesh chandragiri
venkyphysicsiitm at gmail.com
Fri Jun 15 11:03:36 CEST 2018
Dear Prof. Laurence Marks,
thanks for your reply. As pointed in my mail I kept all the variable paths
to bashrc file as well as in the jobscript file. Also I did the "ldd
lapw1c_mpi"
the output is ==========
[renwei at ln3 ~/venky/soft/wien2k]$ ldd lapw1c_mpi
linux-vdso.so.1 => (0x00007ffdad1ea000)
libfftw3_mpi.so.3 =>
/THFS/home/renwei/venky/soft/fftw/lib/libfftw3_mpi.so.3 (0x00002b621871d000)
libmkl_scalapack_lp64.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_scalapack_lp64.so
(0x00002b6218934000)
libmkl_blacs_intelmpi_lp64.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
(0x00002b621920b000)
libfftw3.so.3 =>
/THFS/home/renwei/venky/soft/fftw/lib/libfftw3.so.3 (0x00002b6219447000)
libmkl_intel_lp64.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so
(0x00002b6219753000)
libmkl_intel_thread.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_intel_thread.so
(0x00002b6219ea2000)
libmkl_core.so =>
/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_core.so
(0x00002b621aec1000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003cbce00000)
* libmpifort.so.12 =>
/opt/intel/impi/5.0.2.044/intel64/lib/libmpifort.so.12
<http://5.0.2.044/intel64/lib/libmpifort.so.12> (0x00002b621c5d8000)*
libmpi.so.12 => /opt/intel/impi/5.0.2.044/intel64/lib/libmpi.so.12
(0x00002b621c861000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003cbca00000)
librt.so.1 => /lib64/librt.so.1 (0x0000003cbd600000)
libm.so.6 => /lib64/libm.so.6 (0x0000003cbc200000)
libiomp5.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so
(0x00002b621cfd5000)
libc.so.6 => /lib64/libc.so.6 (0x0000003cbc600000)
libgcc_s.so.1 =>
/THFS/home/sh-hzw2/software/Matlab2014a//sys/os/glnxa64/libgcc_s.so.1
(0x00002b621d2f1000)
libimf.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libimf.so
(0x00002b621d506000)
libsvml.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libsvml.so
(0x00002b621d9ca000)
libirng.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libirng.so
(0x00002b621e5c5000)
libintlc.so.5 =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libintlc.so.5
(0x00002b621e7cc000)
/lib64/ld-linux-x86-64.so.2 (0x0000003cbbe00000)
=====================
As I highlighted above *libmpifort.so.*12 has well defined path. do you
have any comment on this.
Further, you are pointed out that "the shared libraries are not present on
the computer you are connecting to via ssh and/or the path has not been
exported ". I already copied the key in the
id_rsa.pub file to authorized_keys file (both are in the same server where
wien2k installed) to make the password free ssh.
[renwei at ln3 ~/.ssh]$ ls -la
total 32
drwx------ 2 renwei renwei 4096 Jun 15 04:10 .
drwx------ 44 renwei renwei 4096 Jun 15 04:10 ..
-rw------- 1 renwei renwei 1200 May 19 13:46 authorized_keys
-rw------- 1 renwei renwei 1675 May 17 13:44 id_rsa
-rw-r--r-- 1 renwei renwei 392 May 17 13:44 id_rsa.pub
-rw-r--r-- 1 renwei renwei 11641 Jun 14 10:45 known_hosts
do I need to change the permission between the authorized_keys & id_rsa.pub
...?
thanks
venkatesh
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