[Wien] error in running .machines file

venkatesh chandragiri venkyphysicsiitm at gmail.com
Sat Jun 16 12:28:23 CEST 2018


Dear Prof. Marks,

I did "ssh othernode ldd $WIENROOT/lapw0_mpi".

=========

[renwei at ln3 ~]$  ssh cn308 ldd $WIENROOT/lapw0_mpi
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/bin/mklvars.sh: line 118:
manpath: command not found
        linux-vdso.so.1 =>  (0x00007fffd8fff000)
        libfftw3_mpi.so.3 =>
/THFS/home/renwei/venky/soft/fftw/lib/libfftw3_mpi.so.3 (0x00007fd41621d000)
        libmkl_scalapack_lp64.so =>
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_scalapack_lp64.so
(0x00007fd415947000)
        libmkl_blacs_intelmpi_lp64.so =>
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
(0x00007fd41570a000)
        libfftw3.so.3 =>
/THFS/home/renwei/venky/soft/fftw/lib/libfftw3.so.3 (0x00007fd4153fe000)
        libmkl_intel_lp64.so =>
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_intel_lp64.so
(0x00007fd414cb0000)
        libmkl_intel_thread.so =>
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_intel_thread.so
(0x00007fd413c90000)
        libmkl_core.so =>
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/libmkl_core.so
(0x00007fd41259c000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fd412380000)

*        libmpifort.so.12 => not found        libmpi.so.12 => not found*
        libdl.so.2 => /lib64/libdl.so.2 (0x00007fd412172000)
        librt.so.1 => /lib64/librt.so.1 (0x00007fd411f69000)
        libm.so.6 => /lib64/libm.so.6 (0x00007fd411ce5000)
        libiomp5.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so
(0x00007fd4119ca000)
        libc.so.6 => /lib64/libc.so.6 (0x00007fd411628000)
        libgcc_s.so.1 =>
/THFS/home/sh-hzw2/software/Matlab2014a//sys/os/glnxa64/libgcc_s.so.1
(0x00007fd411413000)
        libimf.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libimf.so
(0x00007fd410f50000)
        libsvml.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libsvml.so
(0x00007fd410354000)
        libirng.so =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libirng.so
(0x00007fd41014d000)
        libintlc.so.5 =>
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libintlc.so.5
(0x00007fd40fef7000)
        /lib64/ld-linux-x86-64.so.2 (0x00007fd416436000)

=========

As it is shown here *        libmpifort.so.12 => not found,
libmpi.so.12 => not found when I run in cn308 node*

But these have well defined paths when run ldd at "renwei"

        libmpifort.so.12 => /opt/intel/impi/
5.0.2.044/intel64/lib/libmpifort.so.12 (0x00002b3a37c98000)
        libmpi.so.12 => /opt/intel/impi/5.0.2.044/intel64/lib/libmpi.so.12
(0x00002b3a37f21000)

===================

[renwei at ln3 ~]$ ssh cn308 $WIENROOT/lapw0_mpi
/THFS/opt/intel/composer_xe_2013_sp1.3.174/mkl/bin/mklvars.sh: line 118:
manpath: command not found
/THFS/home/renwei/venky/soft/wien2k/lapw0_mpi: error while loading shared
libraries: libmpifort.so.12: cannot open shared object file: No such file
or directory
[renwei at ln3 ~]$


===============

[renwei at ln3 ~]$ ssh cn308
Last login: Sat Jun 16 17:59:04 2018 from ln3-gn0
-bash: manpath: command not found
[renwei at cn308 ~]$ $WIENROOT/lapw0_mpi
/THFS/home/renwei/venky/soft/wien2k/lapw0_mpi: error while loading shared
libraries: libmpifort.so.12: cannot open shared object file: No such file
or directory


*========================*

You also mentioned to use " use static compilation". I don't understand
this. do you meant to be static compilation of wien2k..? how I can do it (I
am sorry to ask this, as I belongs to experimental background I don't come
across these kind of issues).


thank you.

venkatesh
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20180616/42c9e5ff/attachment.html>


More information about the Wien mailing list