[Wien] Structure optimization of Beta -Sn
Xavier Rocquefelte
xavier.rocquefelte at univ-rennes1.fr
Thu Jun 4 08:58:39 CEST 2020
Dear Shamik
I will do as I do with my colleagues who are learning how to use WIEN2k ;)
Use the cif file I previously sent. If you directory is named Beta-Sn,
rename the cif file Beta-Sn.cif.
Then use cif2struct in this way: cif2struct Beta-Sn.cif. It will
generate Beta-Sn.struct
Then initialize the calculation and read carefully what WIEN2k is saying.
You will see this message when doing sgroup:
> sgroup (08:56:30) 0.000u 0.000s 0:00.00 0.0% 0+0k 0+8io 0pf+0w
Names of point group: -4m2 -4m2 D2d
warning: !!! Struct file is not consistent with space group found.
Number and name of space group: 141 (I 41/a m d) [origin choice 2]
warning: !!! Struct file is not consistent with space group found.
-----> check in TT.outputsgroup for proper symmetry, compare
with your struct file and later with TT.outputs
sgroup has also produced a new struct file based on your old one.
If you see warnings above, consider to use the newly generated
struct file, which you can view (edit) now.
-----> continue with symmetry (old case.struct) or use/edit
TT.struct_sgroup ? (c/e)
e
You see that WIEN2k is not happy with this setting and more specifically
WIEN2k has only one origin choice for this space group (the second one)
while the structure I sent you and the one you were using is based on
the origin choice 1. But WIEN2k helps you and proposes to generate the
structure file with the origin choice 2.
Thus you must use the new file.
e
-----> Do you want to use the new struct file ? (y/n)
y
next is nn
> nn (08:57:51) specify nn-bondlength factor: (usually=2) [and
optionally dlimit, dstmax (about
1.d-5, 20)]
2
DSTMAX: 22.0000004768372
iix,iiy,iiz 5 5 5 55.0996900000000
55.0996900000000 30.0598750000000
NAMED ATOM: Sn1 Z changed to IATNR+999 to determine equivalency
ATOM 1 Sn1 ATOM 1 Sn1
RMT( 1)=2.50000 AND RMT( 1)=2.50000
SUMS TO 5.00000 LT. NN-DIST= 5.71128
NN ENDS
0.004u 0.000s 0:01.51 0.0% 0+0k 0+32io 0pf+0w
-----> check in TT.outputnn for overlapping spheres,
coordination and nearest neighbor distances
-----> continue with sgroup or edit the TT.struct file (c/e)
c
next is sgroup
> sgroup (08:58:02) 0.000u 0.000s 0:00.00 0.0% 0+0k 0+8io 0pf+0w
Names of point group: -4m2 -4m2 D2d
Number and name of space group: 141 (I 41/a m d) [origin choice 2]
-----> check in TT.outputsgroup for proper symmetry, compare
with your struct file and later with TT.outputs
sgroup has also produced a new struct file based on your old one.
If you see warnings above, consider to use the newly generated
struct file, which you can view (edit) now.
-----> continue with symmetry (old case.struct) or use/edit
TT.struct_sgroup ? (c/e)
c
And as you can see you have no more warnings.
Best regards,
Xavier
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