[Wien] MPI error
Peter Blaha
pblaha at theochem.tuwien.ac.at
Sun Apr 11 19:10:34 CEST 2021
Your script is still wrong.
The .machines file should show:
lapw0:e0150:4
not
lapw0:e0150
:4
Therefore it tries to execute lapw0 instead of lapw0_mpi.
-----------
Anyway, the first thing is to make the sequential wien2k running. You
claimed the WIENROOT is known in the batch job.
Please do:
ls -als $WIENROOT/lapw0
Does it have execute permission ?
If yes, execute lapw0 explicitly:
x lapw0
and a second time:
lapw0 lapw0.def
Am 11.04.2021 um 13:17 schrieb leila mollabashi:
> Dear Prof. Peter Blaha,
>
> Thank you for your guides. You are right. I edited the script and added
> “source ~/.bashrc, echo 'lapw0:'`hostname`' :'$nproc >> .machines” to it.
>
> The crated .machines file is as follows:
>
> lapw0:e0150
>
> :4
>
> 1:e0150:4
>
> 1:e0150:4
>
> granularity:1
>
> extrafine:1
>
> The slurm.out file is:
>
> e0150
>
> # .machines
>
> bash: lapw0: command not found
>
> real 0m0.001s
>
> user 0m0.001s
>
> sys 0m0.000s
>
> grep: *scf1*: No such file or directory
>
> grep: lapw2*.error: No such file or directory
>
>> stop error
>
> When I used the following commands:
>
> echo $WIENROOT
> which lapw0
> which lapw0_mpi
>
> The following paths were printed:
>
> /home/users/mollabashi/v19.2
>
> /home/users/mollabashi/v19.2/lapw0
>
> /home/users/mollabashi/v19.2/lapw0_mpi
>
> But the error is still exists:
>
> bash: lapw0: command not found
>
> When I used your script in (faq page), one time the .machines file was
> generated.
>
> But it stopped due to an error.
>
> test.scf1_1: No such file or directory.
>
> grep: *scf1*: No such file or directory
>
> FERMI - Error
>
> When I loaded openmpi and ifort as well as icc in the script this error
> appeared:
>
>>SLURM_NTASKS_PER_NODE: Undefined variable.
>
> Every time after that the
>
>>SLURM_NTASKS_PER_NODE: Undefined variable
>
> error happened when I used your scripts without changing it. I have
> tried several times even in a new directory with no positive effect.
>
>>SLURM_NTASKS_PER_NODE: Undefined variable.
>
> Sincerely yours,
>
> Leila Mollabashi
>
>
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--
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Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: blaha at theochem.tuwien.ac.at WIEN2k: http://www.wien2k.at
WWW: http://www.imc.tuwien.ac.at
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