[Wien] segmentation fault in lapwso

Fecher, Gerhard fecher at uni-mainz.de
Wed Aug 18 08:33:42 CEST 2021


Dear Luis,
Indeed, this seems to be similar to a problem I had in June
But finally it was running after a restart of the computer with up to  OMP_NUM_THREADS=8 (did not check more)
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg21138.html

I  suspected that I accidently mixed different versions of the Intel compiler, because I could not reproduce it after the restart
therefore I assumed that it was me rather than Wien2k or Intel that caused thje trouble. 

I see that your pthread library (2.28) is eventually different from the one in my case (2.22, or actually 2.26), 
but this is a Linux library and not an Intel one

Ciao
Gerhard

DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
"I think the problem, to be quite honest with you,
is that you have never actually known what the question is."

====================================
Dr. Gerhard H. Fecher
Institut of Physics
Johannes Gutenberg - University
55099 Mainz
________________________________________
Von: Wien [wien-bounces at zeus.theochem.tuwien.ac.at] im Auftrag von Luis Ogando [lcodacal at gmail.com]
Gesendet: Dienstag, 17. August 2021 23:18
An: A Mailing list for WIEN2k users
Betreff: Re: [Wien] segmentation fault in lapwso

Dear Wien2k Community,
   Greetings!
   This message is only to inform that I also had a fragmentation problem with lapwso and Wien2k-21.
   It was a very strange case. After a converged SCF cycle with mBJ and SO, I could not run "run_lapw -NI -so ...". In this case, I always got the following error after lapwso:

forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source
lapwso             000000000046A0EA  Unknown               Unknown  Unknown
libpthread-2.28.s  00001530B217B730  Unknown               Unknown  Unknown
libiomp5.so        00001530B1D132FB  Unknown               Unknown  Unknown
libiomp5.so        00001530B1D13049  Unknown               Unknown  Unknown
libiomp5.so        00001530B1D14B59  Unknown               Unknown  Unknown
libiomp5.so        00001530B1D161E8  Unknown               Unknown  Unknown
libiomp5.so        00001530B1D0C926  Unknown               Unknown  Unknown
lapwso             000000000049CA86  Unknown               Unknown  Unknown
lapwso             000000000040D77F  hmsout_mp_finit_h         119  modules.F
lapwso             000000000042B94E  MAIN__                    622  lapwso.F
lapwso             0000000000404D22  Unknown               Unknown  Unknown
libc-2.28.so<http://libc-2.28.so/>       00001530A3E3609B  __libc_start_main     Unknown  Unknown
lapwso             0000000000404C2A  Unknown               Unknown  Unknown
0.167u 0.051s 0:00.10 210.0% 0+0k 0+1976io 0pf+0w
error: command   /home/ogando/Wien/Wien21/lapwso lapwso.def   failed

   The solution was to change OMP_NUM_THREADS from 4 to 1.
   I checked and it also worked with OMP_NUM_THREADS equal to 2 but not 3.
   If someone is interested in the compilation options or any other information, please ask.
   All the best,
                  Luis



Em qui., 10 de jun. de 2021 às 08:17, Fecher, Gerhard <fecher at uni-mainz.de<mailto:fecher at uni-mainz.de>> escreveu:
Dear all,
while running a -so calculation I hit a segmentation fault in lapwso (see below) with the latest version Wien2k21.1 that does NOT appear in 19.2.
(appeared for two different systems in fresh directories)

Did someone experience the same, or did I miss a report and may be not up to date?

I used all settings the same (mostly default values), and the same compilers and options (Intel OneAPI 2021 2.0 and Parallel Studio XE 2017.4.056) for both versions, 21.1 and 19.2

forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image              PC                Routine            Line        Source
lapwso             000000000046CE0A  Unknown               Unknown  Unknown
libpthread-2.22.s  00002AFBCC6DAB10  Unknown               Unknown  Unknown
libiomp5.so        00002AFBCCF2C8E8  Unknown               Unknown  Unknown
lapwso             000000000049F7A6  Unknown               Unknown  Unknown
lapwso             0000000000421E9E  hmsec_                    926  hmsec.F

line 926 is;       deallocate(meigve)
indeed, if  this is the correct line at all.

indeed in 21.2 (I have seen that hmsec.F is different in 19.2)

Thanks for any suggestions that help

Gerhard

DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
"I think the problem, to be quite honest with you,
is that you have never actually known what the question is."

====================================
Dr. Gerhard H. Fecher
Institut of Physics
Johannes Gutenberg - University
55099 Mainz
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