[Wien] lapw0 coredump on Opensuse Tumbleweed (Kernel 6.13.8-1-default (64-bit)) with Intel OneApi ifx / icx Compiler
Fecher, Gerhard
fecher at uni-mainz.de
Sat Mar 29 16:28:02 CET 2025
Not enaugh information.
What Compilerswitches ? Did you try the most optimisation right from beginning or did you start with „smooth“ switches?
Does the serial version work ?
What do you expect to go wrong with the next Leap version ?
Ciao
Gerhard
DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
"I think the problem, to be quite honest with you,
is that you have never actually known what the question is."
====================================
Dr. Gerhard H. Fecher
Institut of Physics
Johannes Gutenberg - University
55099 Mainz
________________________________________
Von: Wien [wien-bounces at zeus.theochem.tuwien.ac.at] im Auftrag von Michael Fechtelkord via Wien [wien at zeus.theochem.tuwien.ac.at]
Gesendet: Samstag, 29. März 2025 12:01
An: A Mailing list for WIEN2k users
Cc: Michael Fechtelkord
Betreff: [Wien] lapw0 coredump on Opensuse Tumbleweed (Kernel 6.13.8-1-default (64-bit)) with Intel OneApi ifx / icx Compiler
Hello all,
due to the upcoming change of opensuse leap 15.6 to 16.0, I am trying if
opensuse Tumbleweed (Kernel 6.13.8-1-default (64-bit)) works better for
me than the new Leap 16 architecture. Compilation of elpa 2025, fftw
3.3.10, libxc 7.0.0 and mpich 4.3.0 and WIEN2k works all fine under
oneapi ifx / icx 2025.1.0.
However lapw0 crashes on all structures I tried to calculate. The
systemd-coredump shows the following messages:
systemd-coredump[397837]: [🡕] Process 397828 (lapw0) of user 1000
dumped core.
Module
libmkl_vml_avx2.so.2 without build-id.
Module
libmkl_avx2.so.2 without build-id.
Module libarcher.so
without build-id.
Module libirng.so
without build-id.
Module libsvml.so
without build-id.
Module libintlc.so.5
without build-id.
Module
libmkl_core.so.2 without build-id.
Module
libmkl_intel_thread.so.2 without build-id.
Module
libmkl_intel_lp64.so.2 without build-id.
Module
libfftw3_omp.so.3 without build-id.
Module libfftw3.so.3
without build-id.
Module libiomp5.so
without build-id.
Module libimf.so
without build-id.
Stack trace of
thread 397835:
#0
0x0000000000491a58 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91a58)
#1
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#2
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#3
0x00001520b26cfaae __kmp_launch_thread (libiomp5.so + 0xcfaae)
#4
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#5
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#6
0x00001520aa91d94c __clone3 (libc.so.6 + 0x11d94c)
Stack trace of
thread 397829:
#0
0x000000000103f03a __intel_avx_rep_memset (/usr/local/WIEN2k/lapw0 +
0xc3f03a)
#1
0x0000000000491ac1 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91ac1)
#2
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#3
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#4
0x00001520b26cfaae __kmp_launch_thread (libiomp5.so + 0xcfaae)
#5
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#6
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#7
0x00001520aa91d94c __clone3 (libc.so.6 + 0x11d94c)
Stack trace of
thread 397828:
#0
0x000000000103f03a __intel_avx_rep_memset (/usr/local/WIEN2k/lapw0 +
0xc3f03a)
#1
0x0000000000491ac1 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91ac1)
#2
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#3
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#4
0x00001520b26ca32c __kmp_fork_call (libiomp5.so + 0xca32c)
#5
0x00001520b268b400 __kmpc_fork_call (libiomp5.so + 0x8b400)
#6
0x000000000047c029 MAIN__ (/usr/local/WIEN2k/lapw0 + 0x7c029)
#7
0x0000000000407a7d main (/usr/local/WIEN2k/lapw0 + 0x7a7d)
#8
0x00001520aa82b12e __libc_start_call_main (libc.so.6 + 0x2b12e)
#9
0x00001520aa82b1f9 __libc_start_main@@GLIBC_2.34 (libc.so.6 + 0x2b1f9)
#10
0x0000000000407985 _start (/usr/local/WIEN2k/lapw0 + 0x7985)
Stack trace of
thread 397830:
#0
0x000000000103f03a __intel_avx_rep_memset (/usr/local/WIEN2k/lapw0 +
0xc3f03a)
#1
0x0000000000491ac1 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91ac1)
#2
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#3
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#4
0x00001520b26cfaae __kmp_launch_thread (libiomp5.so + 0xcfaae)
#5
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#6
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#7
0x00001520aa91d94c __clone3 (libc.so.6 + 0x11d94c)
Stack trace of
thread 397832:
#0
0x000000000103f03a __intel_avx_rep_memset (/usr/local/WIEN2k/lapw0 +
0xc3f03a)
#1
0x0000000000491ac1 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91ac1)
#2
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#3
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#4
0x00001520b26cfaae __kmp_launch_thread (libiomp5.so + 0xcfaae)
#5
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#6
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#7
0x00001520aa91d94c __clone3 (libc.so.6 + 0x11d94c)
Stack trace of
thread 397834:
#0
0x000000000103f03a __intel_avx_rep_memset (/usr/local/WIEN2k/lapw0 +
0xc3f03a)
#1
0x0000000000491ac1 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91ac1)
#2
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#3
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#4
0x00001520b26cfaae __kmp_launch_thread (libiomp5.so + 0xcfaae)
#5
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#6
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#7
0x00001520aa91d94c __clone3 (libc.so.6 + 0x11d94c)
Stack trace of
thread 397833:
#0
0x000000000103f03a __intel_avx_rep_memset (/usr/local/WIEN2k/lapw0 +
0xc3f03a)
#1
0x0000000000491ac1 MAIN__.DIR.OMP.PARALLEL.LOOP.12.split63842.split63939
(/usr/local/WIEN2k/lapw0 + 0x91ac1)
#2
0x00001520b2751483 __kmp_invoke_microtask (libiomp5.so + 0x151483)
#3
0x00001520b26d0ff3 __kmp_invoke_task_func (libiomp5.so + 0xd0ff3)
#4
0x00001520b26cfaae __kmp_launch_thread (libiomp5.so + 0xcfaae)
#5
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#6
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#7
0x00001520aa91d94c __clone3 (libc.so.6 + 0x11d94c)
Stack trace of
thread 397831:
#0
0x00001520aa8a1c32 __syscall_cancel_arch (libc.so.6 + 0xa1c32)
#1
0x00001520aa89581c __internal_syscall_cancel (libc.so.6 + 0x9581c)
#2
0x00001520aa895fec __futex_abstimed_wait_common (libc.so.6 + 0x95fec)
#3
0x00001520aa898a78 pthread_cond_wait@@GLIBC_2.3.2 (libc.so.6 + 0x98a78)
#4
0x00001520b2757a56
_ZL22__kmp_suspend_templateI11kmp_flag_64ILb0ELb1EEEviPT_ (libiomp5.so +
0x157a56)
#5
0x00001520b268437e _ZN11kmp_flag_64ILb0ELb1EE7suspendEi (libiomp5.so +
0x8437e)
#6
0x00001520b267e777
_ZL27__kmp_hyper_barrier_release12barrier_typeP8kmp_infoiiiPv
(libiomp5.so + 0x7e777)
#7
0x00001520b26822ad _Z18__kmp_fork_barrierii (libiomp5.so + 0x822ad)
#8
0x00001520b26cf9fd __kmp_launch_thread (libiomp5.so + 0xcf9fd)
#9
0x00001520b27529a2 _ZL19__kmp_launch_workerPv (libiomp5.so + 0x1529a2)
#10
0x00001520aa899546 start_thread (libc.so.6 + 0x99546)
#11
0x00001520aa91d94c __cl.one3 (libc.so.6 + 0x11d94c)
ELF object binary
architecture: AMD x86-64
Any ideas would be welcomed.
Best regards,
Michael
--
Dr. Michael Fechtelkord
Institut für Geologie, Mineralogie und Geophysik
Ruhr-Universität Bochum
Universitätsstr. 150
D-44780 Bochum
Phone: +49 (234) 32-24380
Fax: +49 (234) 32-04380
Email:Michael.Fechtelkord at ruhr-uni-bochum.de
Web Page:https://www.ruhr-uni-bochum.de/kristallographie/kc/mitarbeiter/fechtelkord/
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