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Hello,<br>
I found a little hint on the ATLAS errata Page, but I didn't solve the
problem up to now. It reads <br>
<br>
<i>I'm linking with C, and getting missing symbols (such as <tt>w_wsfe</tt>,<tt>do_fio</tt>,<tt>w_esfe</tt>
or <tt>s_stop</tt>.<br>
These kinds of symbols are Fortran library calls. The problem is that
the C linker does not automatically find the Fortran libraries. The
most common fix is to either link using your fortran linker, or to
rewrite your code so that Fortran routines are not called. If you know
where they are, you can also choose to link in the Fortran libraries
explicitly<br>
</i><br>
I thought the linking would be done with -llapack -lf77blas -lcblas
-latlas -lguide -lpthread<br>
Obviously this is not the case for this problem. It doesn't help to
link the complete libXXX.a files of atlas as well. Does anyone know if
these libraries are the fortran libraries or are they <br>
C libraries (you surely noticed I am coming from the C-side of the
world)?<br>
<br>
kind regards<br>
<br>
Peer<br>
<br>
<br>
kjharris wrote:<br>
<blockquote type="cite" cite="mid40A60950@webmail.ualberta.ca">
<pre wrap="">I hope someone can give me a hand with the problem I'm having when attempting
to compile WIEN. I can compile with the given unoptimized lapack/blas
libraries
when I use the flags with the intel version 8.0 compilers and specify the
libraries twice:
O Compiler options: -FR -mp -w
L Linker Flags: -L../SRC_lib
P Preprocessor flags '-DParallel'
R R_LIB (LAPACK+BLAS): -llapack_lapw -lblas_lapw -lguide -lpthread
-llapack_lapw -lblas_lapw -lguide -lpthread
but when I try to link in instead a compiled version of atlas via the flags:
O Compiler options: -FR -mp -w
L Linker Flags:
-L/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1
P Preprocessor flags '-DParallel'
R R_LIB (LAPACK+BLAS): -llapack -lf77blas -lcblas -latlas -lguide
-lpthread -llapack -lf77blas -lcblas -latlas -lguide -lpthread
I get errors in SRC_lapw1, SRC_lapw2, SRC_lapwdm, SRC_lapwso, SRC_qtl that
look like:
.
.
.
rm pzher2m_tmp_.F
ifort -o ./lapw1 abc.o atpar.o bandv1.o calkpt.o cbcomb.o coors.o cputim.o
dblr
2k.o dgeqrl.o dgewy.o dgewyg.o dlbrfg.o dsbein1.o dscgst.o dstebz2.o dsyevx2.o
d
symm2.o dsyr2m.o dsyrb4.o dsyrb5l.o dsyrdt4.o dsytrd2.o dsywyv.o dsyxev4.o
dvbes
1.o eisps.o errclr.o errflg.o forfhs.o gaunt1.o gaunt2.o gbass.o gtfnam.o
hamilt
.o hns.o horb.o inikpt.o inilpw.o lapw1.o latgen.o lmsort.o locdef.o lohns.o
lop
w.o matmm.o modules.o nn.o outerr.o outwin.o pdsyevx16.o prtkpt.o prtres.o
pzhee
vx16.o rdswar.o rint13.o rotate.o rotdef.o seclit.o seclr4.o seclr5.o select.o
s
ervice.o setkpt.o setwar.o sphbes.o stern.o tapewf.o ustphx.o vectf.o warpin.o
w
fpnt.o wfpnt1.o ylm.o zhcgst.o zheevx2.o zhemm2.o zher2m.o zhetrd2.o pdsyr2m.o
p
zher2m.o -L/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1 -llapack -lf77blas
-lcb
las -latlas -lguide -lpthread -llapack -lf77blas -lcblas -latlas -lguide
-lpthre
ad
bandv1.o(.text+0xcdc): In function `bandv1_':
: undefined reference to `dlarnv_'
dgeqrl.o(.text+0x124): In function `dgeqrl_':
: undefined reference to `dlarf_'
dgeqrl.o(.text+0x269): In function `dgeqrl_':
: undefined reference to `dlarf_'
dlbrfg.o(.text+0x94): In function `dlbrfg_':
: undefined reference to `dlapy2_'
dlbrfg.o(.text+0xf5): In function `dlbrfg_':
: undefined reference to `dlamch_'
dlbrfg.o(.text+0x105): In function `dlbrfg_':
: undefined reference to `dlamch_'
dlbrfg.o(.text+0x1d7): In function `dlbrfg_':
: undefined reference to `dlapy2_'
dsbein1.o(.text+0x551): In function `dsbein1_':
: undefined reference to `dstein_'
dscgst.o(.text+0x278): In function `dscgst_':
: undefined reference to `dsygs2_'
dstebz2.o(.text+0x157): In function `dstebz2_':
: undefined reference to `dlamch_'
dstebz2.o(.text+0x16a): In function `dstebz2_':
: undefined reference to `dlamch_'
dstebz2.o(.text+0x95d): In function `dstebz2_':
: undefined reference to `dlaebz_'
dstebz2.o(.text+0xae9): In function `dstebz2_':
: undefined reference to `dlaebz_'
dstebz2.o(.text+0x14bb): In function `dstebz2_':
: undefined reference to `dlaebz_'
dsyevx2.o(.text+0x3ab): In function `dsyevx2_':
: undefined reference to `dlamch_'
dsyevx2.o(.text+0x3be): In function `dsyevx2_':
: undefined reference to `dlamch_'
dsyevx2.o(.text+0x4b8): In function `dsyevx2_':
: undefined reference to `dlansy_'
dsyevx2.o(.text+0x83b): In function `dsyevx2_':
: undefined reference to `dsterf_'
dsyevx2.o(.text+0xc9e): In function `dsyevx2_':
: undefined reference to `dlacpy_'
dsyevx2.o(.text+0xcd1): In function `dsyevx2_':
: undefined reference to `dorgtr_'
dsyevx2.o(.text+0xd3d): In function `dsyevx2_':
: undefined reference to `dsteqr_'
dsyevx2.o(.text+0xe78): In function `dsyevx2_':
: undefined reference to `dstein_'
dsyevx2.o(.text+0xed6): In function `dsyevx2_':
: undefined reference to `dormtr_'
dsyrdt4.o(.text+0x2b5): In function `dsyrdt4_':
: undefined reference to `dsbtrd_'
dsytrd2.o(.text+0x216): In function `dsytrd2_':
: undefined reference to `dlatrd_'
dsytrd2.o(.text+0x427): In function `dsytrd2_':
: undefined reference to `dsytd2_'
dsytrd2.o(.text+0x500): In function `dsytrd2_':
: undefined reference to `dlatrd_'
dsytrd2.o(.text+0x756): In function `dsytrd2_':
: undefined reference to `dsytd2_'
dsyxev4.o(.text+0x340): In function `dsyxev4_':
: undefined reference to `dlamch_'
dsyxev4.o(.text+0x353): In function `dsyxev4_':
: undefined reference to `dlamch_'
dsyxev4.o(.text+0x44d): In function `dsyxev4_':
: undefined reference to `dlansy_'
dsyxev4.o(.text+0x998): In function `dsyxev4_':
: undefined reference to `dormtr_'
seclit.o(.text+0x2329): In function `seclit_':
: undefined reference to `dsygst_'
seclit.o(.text+0x24f8): In function `seclit_':
: undefined reference to `dsyevx_'
zhcgst.o(.text+0x280): In function `zhcgst_':
: undefined reference to `zhegs2_'
zheevx2.o(.text+0x3e4): In function `zheevx2_':
: undefined reference to `dlamch_'
zheevx2.o(.text+0x3f7): In function `zheevx2_':
: undefined reference to `dlamch_'
zheevx2.o(.text+0x4f1): In function `zheevx2_':
: undefined reference to `zlanhe_'
zheevx2.o(.text+0x83c): In function `zheevx2_':
: undefined reference to `dsterf_'
zheevx2.o(.text+0xca1): In function `zheevx2_':
: undefined reference to `zlacpy_'
zheevx2.o(.text+0xcd4): In function `zheevx2_':
: undefined reference to `zungtr_'
zheevx2.o(.text+0xd5b): In function `zheevx2_':
: undefined reference to `zsteqr_'
zheevx2.o(.text+0xe89): In function `zheevx2_':
: undefined reference to `zstein_'
zheevx2.o(.text+0xee4): In function `zheevx2_':
: undefined reference to `zunmtr_'
zhetrd2.o(.text+0x232): In function `zhetrd2_':
: undefined reference to `zlatrd_'
zhetrd2.o(.text+0x48b): In function `zhetrd2_':
: undefined reference to `zhetd2_'
zhetrd2.o(.text+0x56a): In function `zhetrd2_':
: undefined reference to `zlatrd_'
zhetrd2.o(.text+0x806): In function `zhetrd2_':
: undefined reference to `zhetd2_'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x10
b):
In function `ilaenv_':
: undefined reference to `s_copy'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x16
7):
In function `ilaenv_':
: undefined reference to `s_copy'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x1d
0):
In function `ilaenv_':
: undefined reference to `s_copy'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x1f
4):
In function `ilaenv_':
: undefined reference to `s_copy'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x21
8):
In function `ilaenv_':
: undefined reference to `s_copy'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x2b
9):
In function `ilaenv_':
: undefined reference to `s_cmp'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x2e
5):
In function `ilaenv_':
: undefined reference to `s_cmp'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x30
d):
In function `ilaenv_':
: undefined reference to `s_cmp'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x33
5):
In function `ilaenv_':
: undefined reference to `s_cmp'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x35
d):
In function `ilaenv_':
: undefined reference to `s_cmp'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/liblapack.a(ilaenv.o)(.text+0x38
9):
more undefined references to `s_cmp' follow
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/libf77blas.a(xerbla.o)(.text+0xb
):
In function `xerbla_':
: undefined reference to `s_wsfe'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/libf77blas.a(xerbla.o)(.text+0x2
7):
In function `xerbla_':
: undefined reference to `do_fio'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/libf77blas.a(xerbla.o)(.text+0x4
3):
In function `xerbla_':
: undefined reference to `do_fio'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/libf77blas.a(xerbla.o)(.text+0x4
8):
In function `xerbla_':
: undefined reference to `e_wsfe'
/home/softinstalls/ATLAS/lib/Linux_ATHLONSSE1/libf77blas.a(xerbla.o)(.text+0x5
c):
In function `xerbla_':
: undefined reference to `s_stop'
make[1]: *** [lapw1] Error 1
make[1]: Leaving directory `/home/softinstalls/wien/SRC_lapw1'
make: *** [real] Error 2
I thought perhaps I had built atlas/blas wrong so I downloaded a pre-compiled
version
from the atlas website and ran it with the flags:
O Compiler options: -FR -mp -w
L Linker Flags: -L/home/softinstalls/Linux_ATHLON/lib
P Preprocessor flags '-DParallel'
R R_LIB (LAPACK+BLAS): -llapack -lf77blas -lcblas -latlas -lguide
-lpthread -llapack -lf77blas -lcblas -latlas -lguide -lpthread
only to find the same errors as with the ATLAS that I built.
-------------------
Which of the ATLAS libraries are necessary to link to?
Any suggestions for a fix?
p.s.
Does anyone run one of the intel compilers on amd athlon-XP architecture? does
it work at all? speed compared to ATLAS?
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</pre>
</blockquote>
<br>
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