Ok, thank very much for all suggestions..<br>Nilton<br><br><div class="gmail_quote">2012/1/6 Laurence Marks <span dir="ltr"><<a href="mailto:L-marks@northwestern.edu">L-marks@northwestern.edu</a>></span><br><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<p>A guess, which is the best we can do at the moment. See if you can ssh into the nodes without the ".local" at the end and if you can then create a .machines file without the .local and try x lapw1 -c -p.</p>
<p>If you have access to the dns files also try aliasing the nodes to, for instance, c0, c1 etc and use these in .machines.</p>
<p>The fact that your .machine1 file is empty is wrong, and suggests something has gone wrong. It may be because of the "." in your names leading to some sed problems, but this is just my guess.</p>
<p>---------------------------</p><div class="im"><br>
Professor Laurence Marks<br>
Department of Materials Science and Engineering<br>
Northwestern University<br>
<a href="http://www.numis.northwestern.edu" target="_blank">www.numis.northwestern.edu</a> <a href="tel:1-847-491-3996" value="+18474913996" target="_blank">1-847-491-3996</a><br>
"Research is to see what everybody else has seen, and to think what nobody else has thought"<br>
Albert Szent-Gyorgi<br>
</div>
<div class="gmail_quote"><div><div class="h5">On Jan 6, 2012 2:58 PM, "Nilton" <<a href="mailto:nilton.dantas@gmail.com" target="_blank">nilton.dantas@gmail.com</a>> wrote:<br type="attribution"></div></div>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div><div class="h5">
Dear fellows,<br>thanks for the answers.<br><br><br><div class="gmail_quote">2012/1/2 Peter Blaha <span dir="ltr"><<a href="mailto:pblaha@theochem.tuwien.ac.at" target="_blank">pblaha@theochem.tuwien.ac.at</a>></span><br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
model name : Intel(R) Xeon(R) CPU X3430 @ 2.40GHz<br>
stepping : 5<br>
cpu MHz : 1197.000<br>
</blockquote>
<br></div>
Are you running at half speed ???<br>
At least on my machines it would indicate the expected cpu MHz of 2400</blockquote><div><br>the machine was idle when I got this information. If I repeat with lapw1 submited the speed goes to double.In principle this message should give you some clues.<br>
<br></div><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<br>
The mpirun command you listed is incomplete and wrong. You said you have:<br>
<br>
setenv WIEN_MPIRUN "mpirun -v -np _NP_ -machinefile _HOSTS_ _EXEC_"<br>
<br>
I think the "-v" is wrong ??<br></blockquote><div>It is correct. it means verbose mode as you can see here<br><br>---------------------------------------------------------------------------------------------------------------------------------------<br>
[nilton@bodesking case]$ mpirun -v -np 4 -machinefile .machines /home/nilton/wien2k/lapw1c_mpi lapw1.def <br>running /home/nilton/wien2k/lapw1c_mpi on 4 LINUX ch_p4 processors<br>Created /home/nilton/pesquisa/dftCalc/calWien/gaxtl1-xas/075/case/case/PI13830<br>
-------------------------------------------------------------------------------------------------------------------------------------<br>I am using .machines because .machine1 is empty.<br>I tried this command and it works very well, as you can see in the output of top command<br>
<br>--------------------------------------------------------lapw1c_mpi runnig in bodeking<br>[nilton@bodesking ~]$ top<br><br>top - 17:41:40 up 2:31, 6 users, load average: 0.42, 0.99, 1.91<br>Tasks: 201 total, 2 running, 199 sleeping, 0 stopped, 0 zombie<br>
Cpu(s): 8.7%us, 1.1%sy, 0.0%ni, 85.8%id, 0.0%wa, 0.1%hi, 4.4%si, 0.0%st<br>Mem: 12250640k total, 1639948k used, 10610692k free, 137816k buffers<br>Swap: 8193140k total, 0k used, 8193140k free, 879624k cached<br>
<br> PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND <br>14711 nilton 16 0 47540 22m 3220 R 35.2 0.2 0:13.03 lapw1c_mpi <br><br>---------------------------------------------------------------------------------------------------------------<br>
<br><br>-----------------------lapw1c_mpi running in comput-0-0------------<br>[nilton@compute-0-1 ~]$ top<br><br>top - 17:42:38 up 4 days, 3:34, 2 users, load average: 0.41, 0.91, 2.08<br>Tasks: 115 total, 2 running, 113 sleeping, 0 stopped, 0 zombie<br>
Cpu(s): 6.2%us, 0.7%sy, 0.0%ni, 88.2%id, 0.0%wa, 0.6%hi, 4.3%si, 0.0%st<br>Mem: 6058240k total, 3244748k used, 2813492k free, 207132k buffers<br>Swap: 1020116k total, 0k used, 1020116k free, 2881356k cached<br>
<br> PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND <br>17044 nilton 16 0 65288 34m 3204 R 29.3 0.6 0:30.33 lapw1c_mpi <br><br><br>and by the way the time program is instaled as you can see below<br>
<br>[nilton@bodesking case]$ time<br><br>real 0m0.000s<br>user 0m0.000s<br>sys 0m0.000s<br><br>Nilton<br>-- <br></div></div>Nilton S. Dantas<br>Universidade Estadual de Feira de Santana<br>Departamento de Ciências Exatas<br>
Área de Informática<br>Av. Transnordestina, S/N, Bairro Novo Horizonte<br>CEP 44036900 - Feira de Santana, Bahia, Brasil<br>Tel./Fax <a href="tel:%2B55%2075%2031618086" value="+557531618086" target="_blank">+55 75 31618086</a><br>
<a href="http://www.uefs.br/portal" target="_blank">http://www2.ecomp.uefs.br/</a><br>
<br>
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<br></blockquote></div><br><br clear="all"><br>-- <br>Nilton S. Dantas<br>Universidade Estadual de Feira de Santana<br>Departamento de Ciências Exatas<br>Área de Informática<br>Av. Transnordestina, S/N, Bairro Novo Horizonte<br>
CEP 44036900 - Feira de Santana, Bahia, Brasil<br>Tel./Fax +55 75 31618086<br><a href="http://www.uefs.br/portal" target="_blank">http://www2.ecomp.uefs.br/</a><br><br>