<p>Hmmm. I was hoping for something human readable like a traceback showing where it died. Please check both the lapw0.error files and case.dayfile to see if they gave anything useful. Also, what are the last few lines of case.output0000?</p>
<p>You may get somewhere by running the mpirun command by hand, I have seen this help. If you understand csh then you want to add an echo $tt at the relevant location in lapw0para. </p>
<p>If not you can change the first line of lapw1para to "-xf" rather than just "-f". Then do x lapw0 -p again. You will get a hundred or so lines of output one of which towards the end will be something like</p>
<p>"mpirun -np 12 ..."</p>
<p>Then paste this line by itself in a terminal. Maybe then something human readable will emerge.</p>
<p>Unfortunately debugging mpi is not trivial, and a SIGSEV can also be non trivial as the error may not appear at the right place, making life more fun. </p>
<p>Do you gave totalview or a similar mpi debugger available? You can get a demo version of totalview free for I believe 30 days.</p>
<p>---------------------------<br>
Professor Laurence Marks<br>
Department of Materials Science and Engineering<br>
Northwestern University<br>
<a href="http://www.numis.northwestern.edu">www.numis.northwestern.edu</a> 1-847-491-3996<br>
"Research is to see what everybody else has seen, and to think what nobody else has thought"<br>
Albert Szent-Gyorgi<br>
</p>
<div class="gmail_quote">On Aug 28, 2012 10:09 PM, "Paul Fons" <<a href="mailto:paul-fons@aist.go.jp">paul-fons@aist.go.jp</a>> wrote:<br type="attribution"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">
I compiled fftw3 using the Intel suite as well. The appropriate line from config.log reads
<div><br>
<div>./configure CC=icc F77=ifort MPICC=mpiicc --prefix=/opt/local --enable-mpi --enable-threads --prefix=/opt/local/fftw3</div>
<div><br>
</div>
<div>I note that the configuration file only calls for a mpicc compiler (and I used the Intel compiler) and not a fortran compiler. The compiled code (mpi-bench does work fine with the Intel mpirun).</div>
<div><br>
</div>
<div><br>
</div>
<div>After commenting out the call W2kinit subroutine and recompiling lapw0 (via the siteconfig script), I attempted to run run_lapw in both serial and parallel forms as you can see below. The serial form worked fine</div>
<div><br>
</div>
<div>Paul</div>
<div><br>
</div>
<div>
<div>matstud@ursa:~/WienDisk/Fons/GaAs> run_lapw</div>
<div> LAPW0 END</div>
<div> LAPW1 END</div>
<div> LAPW2 END</div>
<div> CORE END</div>
<div> MIXER END</div>
<div>ec cc and fc_conv 1 1 1</div>
<div><br>
</div>
<div>> stop</div>
<div><br>
</div>
<div><br>
</div>
<div>matstud@ursa:~/WienDisk/Fons/GaAs> run_lapw -p</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div>forrtl: severe (174): SIGSEGV, segmentation fault occurred</div>
<div><br>
</div>
<div>> stop error</div>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
<div>
<div>On Aug 28, 2012, at 9:16 AM, Laurence Marks wrote:</div>
<br>
<blockquote type="cite">
<p>One suggestion: comment out the line towards the top of lapw0.F </p>
<p> call W2kinit </p>
<p>You should get a more human readable error message. </p>
<p>As an addendum, was fftw3 compiled with mpiifort? I assume from your email that it was, just checking.
</p>
<p>N.B., there is a small chance that this will hang your computer.</p>
_______________________________________________<br>
Wien mailing list<br>
<a href="mailto:Wien@zeus.theochem.tuwien.ac.at" target="_blank">Wien@zeus.theochem.tuwien.ac.at</a><br>
<a href="http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien" target="_blank">http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien</a><br>
</blockquote>
</div>
<br>
<div>
<div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">Dr. Paul Fons</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
Senior Research Scientist</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
Functional Nano-phase-change Research Team</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
Nanoelectronics Research Institute</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">National Institute for Advanced Industrial Science & Technology</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">METI</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<br>
</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">AIST Central 4, Higashi 1-1-1</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">Tsukuba, Ibaraki JAPAN 305-8568</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font:normal normal normal 12px/normal Helvetica;min-height:14px;font-size:12px">
<br>
</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">tel. +81-298-61-5636</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">fax. +81-298-61-2939</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font:normal normal normal 12px/normal Helvetica;min-height:14px;font-size:12px">
<br>
</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Helvetica" size="3" style="font:normal normal normal 12px/normal Helvetica">email: </font><font face="Helvetica" size="3" color="#1919ff" style="font:normal normal normal 12px/normal Helvetica;color:rgb(25,25,255)"><u style="color:rgb(25,25,255)"><a href="mailto:paul-fons@aist.go.jp" target="_blank">paul-fons@aist.go.jp</a></u></font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font:normal normal normal 12px/normal Helvetica;min-height:14px;font-size:12px">
<br>
</div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Hiragino Kaku Gothic Pro"><span style="font-family:'Hiragino Kaku Gothic Pro'">The following lines are in a Japanese font</span></font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Hiragino Kaku Gothic Pro"><br>
</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Hiragino Kaku Gothic Pro"><span style="font-family:'Hiragino Kaku Gothic Pro'">〒305-8562 茨城県つくば市つくば中央東 1-1-1</span></font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="Hiragino Kaku Gothic Pro"><span style="font-family:'Hiragino Kaku Gothic Pro'">産業技術総合研究所</span></font></div>
<div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="'Hiragino Kaku Gothic Pro'">ナノエレクトロニクス研究部門</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="'Hiragino Kaku Gothic Pro'">相変化新規機能デバイス研究チーム</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<font face="'Hiragino Kaku Gothic Pro'">主任研究員</font></div>
<div style="font-family:Helvetica;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-size:12px">
<span style="font-family:'Hiragino Kaku Gothic Pro'">ポール・フォンス</span></div>
<span style="text-indent:0px;letter-spacing:normal;font-variant:normal;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:Helvetica;word-spacing:0px">
<div style="word-wrap:break-word">
<span style="text-indent:0px;letter-spacing:normal;font-variant:normal;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:Helvetica;word-spacing:0px">
<div style="word-wrap:break-word">
<div><span style="font-size:12px">
<div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px">
<br>
</div>
</span></div>
</div>
</span><br>
</div>
</span><br>
</div>
<br>
</div>
<br>
</div>
</div>
</div>
</blockquote></div>