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<div class="moz-cite-prefix">Hi Luis,<br>
<br>
You were right. The problem was in the parallel options. I had to
change this library and also recompile fftw3_mpi library with the
correct openmpi compiler.<br>
<br>
Regards!!<br>
Arturo<br>
<br>
El 06/02/13 14:04, Luis Ogando escribió:<br>
</div>
<blockquote
cite="mid:CANpt3sgXrB1yYgGt7JtmhQ1izrjLNZKUVO27dihqksm-3Ex6kA@mail.gmail.com"
type="cite">Hi Arturo,
<div><br>
</div>
<div> You have to check the compilation options for the parallel
version (not the serial one) and change -lmkl_blacs_lp64
by -lmkl_blacs_openmpi_lp64 in the
RP_LIB(SCALAPACK+PBLAS): line.</div>
<div> Good luck,</div>
<div> Luis</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
<br>
<div class="gmail_quote">2013/2/6 Arturo <span dir="ltr"><<a
moz-do-not-send="true" href="mailto:artginer@bifi.es"
target="_blank">artginer@bifi.es</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<div>Hi Luis,<br>
<br>
First of all, thanks for help!! <br>
<br>
In the first suggestion, how can I know if I'm using
this library? <br>
In the compilations options, I don't use that library. I
used:<br>
<br>
-lmkl_lapack95_lp64 -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -openmp -lpthread<br>
<br>
So the solution you suggest is to add the library
mkl_blacs_openmpi_lp64 to this line?<br>
<br>
Regards<br>
<br>
<br>
El 06/02/13 13:32, Luis Ogando escribió:<br>
</div>
<div>
<div class="h5">
<blockquote type="cite">Hi Arturo,
<div><br>
</div>
<div> Try <a moz-do-not-send="true"
href="http://zeus.theochem.tuwien.ac.at/pipermail/wien/2012-July/017207.html"
target="_blank">http://zeus.theochem.tuwien.ac.at/pipermail/wien/2012-July/017207.html</a> </div>
<div> </div>
<div> The first suggestion given by Prof. Marks
solved a similar problem to me.</div>
<div> All the best,</div>
<div> Luis</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
<br>
<div class="gmail_quote"> 2013/2/6 Arturo <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:artginer@bifi.es"
target="_blank">artginer@bifi.es</a>></span><br>
<blockquote class="gmail_quote" style="margin:0
0 0 .8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"> Hi,<br>
<br>
We are trying to run wien2k v12, compiled
with openmpi 1.5.4 and intel compilers 12.1
but it gives us a segmentations fault while
executing the following:<br>
<br>
mpirun -np 4
/cm/shared/apps/WIEN2k_12/lapw1_mpi
uplapw1_1.defcat<br>
<br>
The errors are these:<br>
<small><br>
w2k_dispatch_signal(): received:
Segmentation fault<br>
w2k_dispatch_signal(): received:
Segmentation fault<br>
w2k_dispatch_signal(): received:
Segmentation fault<br>
w2k_dispatch_signal(): received:
Segmentation fault<br>
--------------------------------------------------------------------------<br>
MPI_ABORT was invoked on rank 1 in
communicator MPI_COMM_WORLD <br>
with errorcode 91.<br>
<br>
NOTE: invoking MPI_ABORT causes Open MPI
to kill all MPI processes.<br>
You may or may not see output from other
processes, depending on<br>
exactly when Open MPI kills them.<br>
--------------------------------------------------------------------------<br>
Child id 0 SIGSEGV, contact
developers<br>
Child id 1 SIGSEGV, contact
developers<br>
Child id 2 SIGSEGV, contact
developers<br>
Child id 3 SIGSEGV, contact
developers<br>
--------------------------------------------------------------------------<br>
mpirun has exited due to process rank 2
with PID 25559 on<br>
node node042 exiting without calling
"finalize". This may<br>
have caused other processes in the
application to be<br>
terminated by signals sent by mpirun (as
reported here).<br>
--------------------------------------------------------------------------<br>
[node042:25556] 3 more processes have sent
help message help-mpi-api.txt / mpi-abort<br>
[node042:25556] Set MCA parameter
"orte_base_help_aggregate" to 0 to see all
help / error messages</small><br>
<br>
And the ulimit -s is unlimited.<br>
<br>
Could you help us executing wien2k in
parallel mode? Sequential is working fine.<br>
<br>
Best Regards<span><font color="#888888"><br>
Arturo<br>
<br>
</font></span></div>
<br>
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