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<div class="moz-cite-prefix">Hello,<br>
<br>
I'd suggest trying three things.<br>
<br>
First of all - does your cluster allow running interactive jobs?
If yes, than you should create an interactive job to run
/bin/bash. I'm not familiar with PBS, but in SGE/OGE if you print
cluster queues with "qstat -f" you'll see "I" in column qtype
which means that given queue allows running interactive jobs.
Using bash you should be able to run top on given node without SSH
access.<br>
<br>
Regardless of success or failure you should be able to look at
nodes statistics using "qhost" command. You should see at lease
what is the current load, memory usage and swap usage. In SGE/OGE
there's a switch "-j" to qhost which will also show you what jobs
are currently running on each node. It's necessary to be able to
see load of machine interactively instead of view at some point of
time. <br>
<br>
The last concept is to prepare a job to run at the same time on
the same node as Wien2K, consisting of several <br>
"ps auxww | grep ogando >> ${HOME}/ps.output; sleep 2" <br>
commands. It will give you some information on what's going on.
Think of it as non-interactive top stored in text file.<br>
<br>
<br>
Best regards,<br>
<br>
Pawel Lesniak<br>
<br>
<br>
W dniu 23.09.2015 o 14:25, Luis Ogando pisze:<br>
</div>
<blockquote
cite="mid:CANpt3si4eaN3Y9Ob9MFFmrPqOfbPhHZm=ee0PgUL1uUSkqAhFQ@mail.gmail.com"
type="cite">
<div dir="ltr">
<div>
<div>0K ! In this case, I will try it !<br>
</div>
Many thanks,<br>
</div>
Luis<br>
<br>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">2015-09-23 9:23 GMT-03:00 Laurence
Marks <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:laurence.marks@gmail.com" target="_blank">laurence.marks@gmail.com</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<p dir="ltr">Ganglia is web based, you don't need ssh.
Please read the link I sent.</p>
<span class="">
<p dir="ltr">---<br>
Professor Laurence Marks<br>
Department of Materials Science and Engineering<br>
Northwestern University<br>
<a moz-do-not-send="true"
href="http://www.numis.northwestern.edu"
target="_blank">http://www.numis.northwestern.edu</a><br>
Corrosion in 4D <a moz-do-not-send="true"
href="http://MURI4D.numis.northwestern.edu"
target="_blank">http://MURI4D.numis.northwestern.edu</a><br>
Co-Editor, Acta Cryst A<br>
"Research is to see what everybody else has seen, and to
think what nobody else has thought"<br>
Albert Szent-Gyorgi</p>
</span>
<div class="gmail_quote"><span class="">On Sep 23, 2015
07:21, "Luis Ogando" <<a moz-do-not-send="true"
href="mailto:lcodacal@gmail.com" target="_blank">lcodacal@gmail.com</a>>
wrote:<br type="attribution">
</span>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div dir="ltr">
<div><span class="">
<div>
<div> Hi,<br>
<br>
</div>
I can not access the nodes. SSH among them
is forbidden ! We have to ask the
administrators for anything !! It is the hell
!!<br>
</div>
<div> Of course, only the PBS jobs can
"travel" among the nodes.<br>
</div>
</span>
All the best,<br>
</div>
Luis<br>
<br>
</div>
<div>
<div class="h5">
<div class="gmail_extra"><br>
<div class="gmail_quote">2015-09-23 9:14
GMT-03:00 Laurence Marks <span dir="ltr">
<<a moz-do-not-send="true"
href="mailto:laurence.marks@gmail.com"
target="_blank">laurence.marks@gmail.com</a>></span>:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">
<p dir="ltr">Nooooooo!</p>
<p dir="ltr">You should use ganglia
yourself.</p>
<span>
<p dir="ltr">---<br>
Professor Laurence Marks<br>
Department of Materials Science and
Engineering<br>
Northwestern University<br>
<a moz-do-not-send="true"
href="http://www.numis.northwestern.edu"
target="_blank">http://www.numis.northwestern.edu</a><br>
Corrosion in 4D <a
moz-do-not-send="true"
href="http://MURI4D.numis.northwestern.edu"
target="_blank"><a class="moz-txt-link-freetext" href="http://MURI4D.numis.northwestern.edu">http://MURI4D.numis.northwestern.edu</a></a><br>
Co-Editor, Acta Cryst A<br>
"Research is to see what everybody else
has seen, and to think what nobody else
has thought"<br>
Albert Szent-Gyorgi</p>
</span>
<div class="gmail_quote"><span>On Sep 23,
2015 07:13, "Luis Ogando" <<a
moz-do-not-send="true"
href="mailto:lcodacal@gmail.com"
target="_blank"><a class="moz-txt-link-abbreviated" href="mailto:lcodacal@gmail.com">lcodacal@gmail.com</a></a>>
wrote:<br type="attribution">
</span>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">
<div>
<div dir="ltr"><span>
<div>
<div>
<div>
<div>Dear Prof. Marks,<br>
<br>
</div>
Thank you for your
comment.<br>
</div>
I sent your suggestions to
the administrators.<br>
</div>
All the best,<br>
</div>
Luis<br>
<br>
</span>
<div class="gmail_extra"><br>
<div class="gmail_quote"><span>2015-09-23
8:56 GMT-03:00 Laurence Marks
<span dir="ltr">
<<a
moz-do-not-send="true"
href="mailto:laurence.marks@gmail.com"
target="_blank"><a class="moz-txt-link-abbreviated" href="mailto:laurence.marks@gmail.com">laurence.marks@gmail.com</a></a>></span>:<br>
</span>
<blockquote class="gmail_quote"
style="margin:0 0 0
.8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div>
<div>
<p dir="ltr">It is hard to
work this out remotely,
particularly with
unfriendly sys_admin.</p>
<p dir="ltr">I would find
out if you have ganglia
available, see <a
moz-do-not-send="true"
href="http://techpubs.sgi.com/library/tpl/cgi-bin/getdoc.cgi/linux/bks/SGI_Admin/books/ICEX_Admin_Guide/sgi_html/ch05.html#Z1190844523tls"
target="_blank">
<a class="moz-txt-link-freetext" href="http://techpubs.sgi.com/library/tpl/cgi-bin/getdoc.cgi/linux/bks/SGI_Admin/books/ICEX_Admin_Guide/sgi_html/ch05.html#Z1190844523tls">http://techpubs.sgi.com/library/tpl/cgi-bin/getdoc.cgi/linux/bks/SGI_Admin/books/ICEX_Admin_Guide/sgi_html/ch05.html#Z1190844523tls</a></a>
. This is much more
useful than top. Try
doing <a class="moz-txt-link-freetext" href="http://">http://</a>... to
relevant head or admin
nodes.<br>
</p>
<p dir="ltr">---<br>
Professor Laurence Marks<br>
Department of Materials
Science and Engineering<br>
Northwestern University<br>
<a
moz-do-not-send="true"
href="http://www.numis.northwestern.edu" target="_blank"><a class="moz-txt-link-freetext" href="http://www.numis.northwestern.edu">http://www.numis.northwestern.edu</a></a><br>
Corrosion in 4D <a
moz-do-not-send="true"
href="http://MURI4D.numis.northwestern.edu" target="_blank"><a class="moz-txt-link-freetext" href="http://MURI4D.numis.northwestern.edu">http://MURI4D.numis.northwestern.edu</a></a><br>
Co-Editor, Acta Cryst A<br>
"Research is to see what
everybody else has seen,
and to think what nobody
else has thought"<br>
Albert Szent-Gyorgi</p>
<div>
<div>
<div
class="gmail_quote">On
Sep 23, 2015 06:31,
"Luis Ogando" <<a
moz-do-not-send="true" href="mailto:lcodacal@gmail.com" target="_blank"><a class="moz-txt-link-abbreviated" href="mailto:lcodacal@gmail.com">lcodacal@gmail.com</a></a>>
wrote:<br
type="attribution">
<blockquote
class="gmail_quote"
style="margin:0 0
0
.8ex;border-left:1px
#ccc
solid;padding-left:1ex">
<div>
<div dir="ltr">
<div>
<div>
<div>
<div>Dear
Prof. Blaha
and Lyudmila
Dobysheva,<br>
<br>
</div>
Many thanks
for your
comments !<br>
</div>
Unfortunately,
users have no
privileges in
the cluster. I
will send your
comments to
the
administrators
and let's see
what happens.<br>
</div>
Many thanks
again,<br>
</div>
Luis
<div>
<div><img
moz-do-not-send="true"
src="https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif"></div>
</div>
<div
class="gmail_extra"><br>
<div
class="gmail_quote"><br>
</div>
<br>
</div>
</div>
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