<html><head></head><body><div class="ydpfdee720eyahoo-style-wrap" style="font-family: verdana, helvetica, sans-serif;"><div style=""><div style=""><font size="2">Thank you very much Prof. L. Mark,</font></div><div style=""><font size="2"><br></font></div><div style=""><font size="2">"ldd lapw0" returned</font></div><div style=""><font size="2"><br></font></div><div style=""><div style=""><font size="2">linux-vdso.so.1 => (0x00007fff3cfa7000)</font></div><div style=""><font size="2"> libiomp5.so => /software/intel2015-1/composer_xe_2015.3.187/compiler/lib/intel64/libiomp5.so (0x00002b8340b5f000)</font></div><div style=""><font size="2"> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b8340e9f000)</font></div><div style=""><font size="2"> libm.so.6 => /lib64/libm.so.6 (0x00002b83410bf000)</font></div><div style=""><font size="2"> libdl.so.2 => /lib64/libdl.so.2 (0x00002b83413c7000)</font></div><div style=""><font size="2"> libc.so.6 => /lib64/libc.so.6 (0x00002b83415cf000)</font></div><div style=""><font size="2"> /lib64/ld-linux-x86-64.so.2 (0x00002b8340937000)</font></div><div style=""><font size="2"> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b8341997000)</font></div><div style=""><font size="2"><br></font></div><div style=""><font size="2">The compilation and execution was done using composer_xe_2015.3.187,<span><span style="color: rgb(0, 0, 0); font-family: verdana, helvetica, sans-serif; font-size: 16px;"> </span><span style="color: rgb(0, 0, 0); font-family: verdana, helvetica, sans-serif;">libiomp5.so seems to be </span><span style="color: rgb(0, 0, 0); font-family: verdana, helvetica, sans-serif;">in right directory. </span></span></font><span style="font-size: small;">Please which part of compilation option should I edit, and I couldn't figure out what you mean by static compilation in this case. </span></div><div style=""><span style="font-size: small;"><br></span></div><div style=""><font size="2">The system admin is interested, so I have already forward the link to this thread to him/them. </font></div><div style=""><span style="font-size: small;"><br></span></div><div style=""><font size="2">With kind regards</font></div></div><div class="ydpfdee720esignature" style="font-size: 16px;"><p style="font-family:verdana, helvetica, sans-serif;font-size:16px;"><b><font size="3" face="verdana, helvetica, sans-serif"><i>Lawal <br></i></font></b></p></div></div>
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On Thursday, January 10, 2019, 10:17:23 AM GMT+8, Laurence Marks <L-marks@northwestern.edu> wrote:
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<div><div id="yiv9843954622"><div><div>Try "ldd lapw0" to see what shared libraries are being used, then edit your compilation options to do static compilation. Depending upon what compiler your have the options will change; do "ifort --help | more" or "ifort --help > Fort.txt" and read.... (or gfortran, etc).</div><div><br></div><div>At least for the non-mpi you can build lapw0 & others without any shared libraries. I have never seen this fail, but it might.<br><br><div class="yiv9843954622gmail_quote"><div dir="ltr">On Wed, Jan 9, 2019, 19:58 Lawal Mohammed <<a rel="nofollow" ymailto="mailto:mohammedlawal08@yahoo.com" target="_blank" href="mailto:mohammedlawal08@yahoo.com">mohammedlawal08@yahoo.com</a> wrote:<br></div><blockquote class="yiv9843954622gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
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<div><font size="2">Dear Developers and Users,</font></div>
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<div><font size="2">I am facing a problem and need your help.</font></div>
<div><font size="2">The issue is an error when I submitted a job on cluster machine. The error message is: </font></div>
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<div>Calculating Bismuthtest1 in /home/username/WIEN2k/Bismuthtest1</div>
<div>on node5 with PID 21645</div>
<div>using WIEN2k_18.2 (Release 17/7/2018) in /software/wien2k-18.2</div>
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<div> start (Thu Jan 10 09:48:12 CST 2019) with lapw0 (100/99 to go)</div>
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<div> cycle 1 (Thu Jan 10 09:48:12 CST 2019) (100/99 to go)</div>
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<div>> lapw0 -p (09:48:12) starting parallel lapw0 at Thu Jan 10 09:48:12 CST 2019</div>
<div>-------- .machine0 : processors</div>
<div>running lapw0 in single mode</div>
<div>0.022u 0.036s 0:00.08 62.5% 0+0k 0+56io 0pf+0w</div>
<div>error: command /software/wien2k-18.2/lapw0para lapw0.def failed</div>
<div>> stop error</div>
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<div style="font-family:verdana, helvetica, sans-serif;">In the output file the error is:</div>
<div style="font-family:verdana, helvetica, sans-serif;">lapw0: relocation error: lapw0: symbol kmp_aligned_malloc, version VERSION not defined in file libiomp5.so with link time reference<br clear="none">
grep: *scf1*: No such file or directory<br clear="none">
<div>grep: lapw2*.error: No such file or directory</div>
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<div><font size="2">Many thanks to Gavin for pointing out that the error was due to clash between other libraries with the </font><span style="font-family:Helvetica Neue, Helvetica, Arial, sans-serif;"><font size="2"> Intel Fortran library. However, after
I reported the issue, system admin confirmed that the environmental variables was okay.</font> <font size="2">Any help to rectify this issue is highly appreciated.</font></span></div>
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<div><span style="font-family:Helvetica Neue, Helvetica, Arial, sans-serif;"><font size="2">I will provide addition information if needed.</font></span></div>
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<div><span style="font-family:Helvetica Neue, Helvetica, Arial, sans-serif;"><font size="2">Thanks alot for your time.</font></span></div>
<div><span style="font-family:Helvetica Neue, Helvetica, Arial, sans-serif;"><font size="2">With kind regards.</font></span></div>
<div class="yiv9843954622m_-7074460002333152142ydp178f5d66signature" style="font-size:16px;">
<p style="font-family:verdana, helvetica, sans-serif;font-size:16px;"><b><font size="3" face="verdana, helvetica, sans-serif"><i>Lawal
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</blockquote></div></div></div></div>_______________________________________________<br>Wien mailing list<br><a ymailto="mailto:Wien@zeus.theochem.tuwien.ac.at" href="mailto:Wien@zeus.theochem.tuwien.ac.at">Wien@zeus.theochem.tuwien.ac.at</a><br><a href="http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien" target="_blank">http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien</a><br>SEARCH the MAILING-LIST at: <a href="http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html" target="_blank">http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html</a><br></div>
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