<div dir="ltr"><div>compiled fftw with intel mpi and successfully compiled without any error. <br></div><div>After running a job in parallel scf GOT THE FOLLOWING ERROR</div><div><pre>grep: *scf1*: No such file or directory
cp: cannot stat '.in.tmp': No such file or directory
FERMI - Error
grep: *scf1*: No such file or directory
InBi.scf1_1: No such file or directory.
[1] + Done ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr <span>" )
Host key verification failed.
ssh_askpass: exec(/usr/bin/ssh-askpass): No such file or directory
[1] + Done ( ( $remote $machine[$p] "cd $PWD;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% .temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr <span>" )
Host key verification failed.
ssh_askpass: exec(/usr/bin/ssh-askpass): No such file or directory
LAPW0 END
LAPW0 END</span></span></pre> </div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, May 30, 2019 at 6:29 AM Gavin Abo <<a href="mailto:gsabo@crimson.ua.edu">gsabo@crimson.ua.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p>As mentioned in a previous post [1], it looks like <font color="#993399">ompi_mpi</font> in the error messages indicate
that your fftw3 was compiled with Open MPI instead of Intel MPI.</p>
<p>If you have both Open MPI and Intel MPI on your system, you have
to take care of the double <font color="#ff0000">ii</font>'s.</p>
<p>Perhaps, you used mp<font color="#3333ff">i</font>cc for Open MPI
[2] instead of mp<font color="#ff0000">ii</font>cc for Intel MPI
[3] when you compiled fftw3 [4].<br>
</p>
[1]
<a class="gmail-m_4795610064671316913moz-txt-link-freetext" href="https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg13360.html" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg13360.html</a><br>
[2] <a class="gmail-m_4795610064671316913moz-txt-link-freetext" href="https://www.open-mpi.org/faq/?category=mpi-apps#general-build" target="_blank">https://www.open-mpi.org/faq/?category=mpi-apps#general-build</a><br>
[3]
<a class="gmail-m_4795610064671316913moz-txt-link-freetext" href="https://software.intel.com/en-us/mpi-developer-guide-linux-compilers-support" target="_blank">https://software.intel.com/en-us/mpi-developer-guide-linux-compilers-support</a><br>
[4]
<a class="gmail-m_4795610064671316913moz-txt-link-freetext" href="https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg18664.html" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg18664.html</a>
<p><br>
</p>
<div class="gmail-m_4795610064671316913moz-cite-prefix">On 5/29/2019 11:25 AM, Indranil mal
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">/home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In
function `bogosity_hook':<br>
api.c:(.text+0x20): undefined reference to `ompi_mpi_comm_null'<br>
api.c:(.text+0x44): undefined reference to `ompi_mpi_comm_null'<br>
api.c:(.text+0x73): undefined reference to `ompi_mpi_comm_null'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function
`nowisdom_hook':<br>
api.c:(.text+0x9d): undefined reference to `ompi_mpi_comm_null'<br>
api.c:(.text+0xbc): undefined reference to `ompi_mpi_comm_null'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(api.o):api.c:(.text+0xd3):
more undefined references to `ompi_mpi_comm_null' follow<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function
`wisdom_ok_hook':<br>
api.c:(.text+0x1cc): undefined reference to `ompi_mpi_unsigned'<br>
api.c:(.text+0x21f): undefined reference to `ompi_mpi_op_land'<br>
api.c:(.text+0x226): undefined reference to `ompi_mpi_int'<br>
api.c:(.text+0x24b): undefined reference to `ompi_mpi_comm_null'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function
`cost_hook':<br>
api.c:(.text+0x2c7): undefined reference to `ompi_mpi_comm_null'<br>
api.c:(.text+0x2dc): undefined reference to `ompi_mpi_comm_null'<br>
api.c:(.text+0x2ee): undefined reference to `ompi_mpi_op_max'<br>
api.c:(.text+0x2f5): undefined reference to `ompi_mpi_op_sum'<br>
api.c:(.text+0x308): undefined reference to `ompi_mpi_double'<br>
api.c:(.text+0x33b): undefined reference to `ompi_mpi_comm_null'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function
`fftw_mpi_local_size_many_transposed_f03':<br>
f03-wrap.c:(.text+0x3a): undefined reference to `MPI_Comm_f2c'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function
`fftw_mpi_local_size_many_f03':<br>
f03-wrap.c:(.text+0xa5): undefined reference to `MPI_Comm_f2c'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function
`fftw_mpi_local_size_transposed_f03':<br>
f03-wrap.c:(.text+0x103): undefined reference to `MPI_Comm_f2c'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function
`fftw_mpi_local_size_f03':<br>
f03-wrap.c:(.text+0x148): undefined reference to `MPI_Comm_f2c'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function
`fftw_mpi_local_size_many_1d_f03':<br>
f03-wrap.c:(.text+0x1a2): undefined reference to `MPI_Comm_f2c'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o):f03-wrap.c:(.text+0x20a):
more undefined references to `MPI_Comm_f2c' follow<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(transpose-alltoall.o): In
function `apply':<br>
transpose-alltoall.c:(.text+0x83): undefined reference to
`ompi_mpi_double'<br>
transpose-alltoall.c:(.text+0x11f): undefined reference to
`ompi_mpi_double'<br>
transpose-alltoall.c:(.text+0x16d): undefined reference to
`ompi_mpi_double'<br>
transpose-alltoall.c:(.text+0x19f): undefined reference to
`ompi_mpi_double'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(transpose-pairwise.o): In
function `transpose_chunks':<br>
transpose-pairwise.c:(.text+0x53a): undefined reference to
`ompi_mpi_double'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(transpose-pairwise.o):transpose-pairwise.c:(.text+0x54c):
more undefined references to `ompi_mpi_double' follow<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(any-true.o): In function
`fftw_mpi_any_true':<br>
any-true.c:(.text+0xa): undefined reference to `<font color="#993399">ompi_mpi</font>_op_lor'<br>
any-true.c:(.text+0x1f): undefined reference to `ompi_mpi_int'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(wisdom-api.o): In function
`fftw_mpi_gather_wisdom':<br>
wisdom-api.c:(.text+0x92): undefined reference to
`ompi_mpi_unsigned_long'<br>
wisdom-api.c:(.text+0xcd): undefined reference to
`ompi_mpi_char'<br>
wisdom-api.c:(.text+0x12d): undefined reference to
`ompi_mpi_unsigned_long'<br>
wisdom-api.c:(.text+0x158): undefined reference to
`ompi_mpi_char'<br>
/home/dps/fftw3/lib/libfftw3_mpi.a(wisdom-api.o): In function
`fftw_mpi_broadcast_wisdom':<br>
wisdom-api.c:(.text+0x222): undefined reference to
`ompi_mpi_unsigned_long'<br>
wisdom-api.c:(.text+0x24d): undefined reference to
`ompi_mpi_char'<br>
wisdom-api.c:(.text+0x2b5): undefined reference to
`ompi_mpi_unsigned_long'<br>
wisdom-api.c:(.text+0x2da): undefined reference to
`ompi_mpi_char'<br>
Makefile:117: recipe for target 'nlvdw_mpi' failed<br>
make[1]: *** [nlvdw_mpi] Error 1<br>
make[1]: Leaving directory '/home/dps/WIEN2K/SRC_nlvdw'<br>
Makefile:108: recipe for target 'para' failed<br>
make: *** [para] Error 2</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Wed, May 29, 2019 at 5:34
PM Gavin Abo <<a href="mailto:gsabo@crimson.ua.edu" target="_blank">gsabo@crimson.ua.edu</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p>Look inside those compile.msg files as they likely
contain messages showing why they failed to compile.<br>
</p>
<div class="gmail-m_4795610064671316913gmail-m_-4552589799450079137moz-cite-prefix">On
5/28/2019 11:46 AM, Indranil mal wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div>Thank you for kind response <br>
</div>
<div>After following all the instructions given by you I
have installed WIEN2k with Intel parallel compiler.
After compiling I got <br>
</div>
<div><br>
</div>
<div><span class="gmail-m_4795610064671316913gmail-m_-4552589799450079137gmail-im">Compile
time errors (if any) were:<br>
</span>SRC_lapw0/compile.msg:make[1]: *** [lapw0_mpi]
Error 1<span class="gmail-m_4795610064671316913gmail-m_-4552589799450079137gmail-im"><br>
SRC_lapw0/compile.msg:make: *** [para] Error 2<br>
</span>SRC_nlvdw/compile.msg:make[1]: *** [nlvdw_mpi]
Error 1</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
</blockquote>
<blockquote type="cite"></blockquote>
</div>
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