<div dir="ltr"><div dir="ltr">
<span></span>Thank you Sir for your instantaneous support. Now it is working smoothly only with hup: Command not found.<p style="margin-bottom:0cm;line-height:100%"><br>
</p>
</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sun, Sep 29, 2019 at 6:32 PM Gavin Abo <<a href="mailto:gsabo@crimson.ua.edu">gsabo@crimson.ua.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p><font face="Times New Roman">Checking with "which lapw1c" on each
node (vlsi1, vlsi2, vlsi3, and vlsi4) is a good idea. However,
since WIENROOT is (blank) [1], it probably won't work until that
is resolved.</font></p>
<p><font face="Times New Roman">It was mentioned that the WIEN2k
.bashrc block was setup on each node by running userconfig [2].
So it definitely seems strange that WIENROOT is (blank) on the
client nodes since </font><font face="Times New Roman"><font face="Times New Roman">I would think it would work </font>if
both WIENROOT and PATH are both defined from userconfig in
.bashrc: <br>
</font></p>
<p><font face="Times New Roman">username@computername:~$ ssh vlsi1<br>
...<br>
username@computername:~$ cd ~/WIEN2k<br>
username@computername:~/WIEN2k$ which lapw1c<br>
username@computername:~/WIEN2k$ grep "export WIENROOT" ~/.bashrc<br>
username@computername:~/WIEN2k$ grep "export PATH" ~/.bashrc<br>
username@computername:~/WIEN2k$ ./userconfig<br>
...<br>
username@computername:~/WIEN2k$ grep "export WIENROOT" ~/.bashrc<br>
export WIENROOT=/servernode1<br>
username@computername:~/WIEN2k$ grep "export PATH" ~/.bashrc<br>
export
PATH=$WIENROOT:$STRUCTEDIT_PATH:$WIENROOT/SRC_IRelast/script-elastic:$PATH:.<br>
export PATH=$PATH:$WIENROOT:.<br>
username@computername:~/WIEN2k$ source ~/.bashrc<br>
username@computername:~/WIEN2k$ which lapw1c<br>
/home/username/WIEN2k/lapw1c<br>
username@computername:~/WIEN2k$ exit<br>
logout<br>
Connection to vlsi1 closed.<br>
</font></p>
<p>Though, I suppose if something like a conf file [3] was setup by
the user to override .bashrc or a job queue scheduler system is in
use [4] it might also cause the issue.<br>
</p>
[1]
<a href="https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19052.html" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19052.html</a><br>
[2]
<a href="https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html</a><br>
[3]
<a href="https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08016.html" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08016.html</a>
<div>[4]
<a href="https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg15985.html" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg15985.html</a></div>
<div><br>
</div>
<div>On 9/29/2019 6:11 AM, Laurence Marks
wrote:<br>
</div>
<blockquote type="cite">
<div dir="auto">What does
<div dir="auto"><br>
<span style="font-family:sans-serif;font-size:12.8px">ssh
vlsi1 which lapw1c</span></div>
<div dir="auto"><span style="font-size:12.8px;font-family:sans-serif">give, what
does "cat *.error" give in the case directory?</span><br>
</div>
<div dir="auto">
<div dir="auto">_____<br>
Professor Laurence Marks<br>
"Research is to see what everybody else has seen, and to
think what nobody else has thought", Albert Szent-Gyorgi<br>
<a href="http://www.numis.northwestern.edu" target="_blank">www.numis.northwestern.edu</a></div>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sun, Sep 29, 2019, 01:17
Indranil mal <<a href="mailto:indranil.mal@gmail.com" target="_blank">indranil.mal@gmail.com</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div>Now echo $WIENROOT is giving the $WIENROOT location. <br>
</div>
<div><br>
</div>
<div> <span></span>
<p style="margin-bottom:0cm;line-height:100%"> echo
$WIENROOT/lapw*</p>
<p style="margin-bottom:0cm;line-height:100%">/home/username/WIEN2K/lapw0
/home/username/WIEN2K/lapw0_mpi
/home/username/WIEN2K/lapw0para
/home/username/WIEN2K/lapw0para_lapw
/home/username/WIEN2K/lapw1
/home/username/WIEN2K/lapw1c
/home/username/WIEN2K/lapw1c_mpi
/home/username/WIEN2K/lapw1cpara
/home/username/WIEN2K/lapw1_mpi
/home/username/WIEN2K/lapw1para
/home/username/WIEN2K/lapw1para_lapw
/home/username/WIEN2K/lapw2 /home/username/WIEN2K/lapw2c
/home/username/WIEN2K/lapw2c_mpi
/home/username/WIEN2K/lapw2cpara
/home/username/WIEN2K/lapw2_mpi
/home/username/WIEN2K/lapw2para
/home/username/WIEN2K/lapw2para_lapw
/home/username/WIEN2K/lapw3
/home/username/WIEN2K/lapw3c /home/username/WIEN2K/lapw5
/home/username/WIEN2K/lapw5c /home/username/WIEN2K/lapw7
/home/username/WIEN2K/lapw7c
/home/username/WIEN2K/lapwdm
/home/username/WIEN2K/lapwdmc
/home/username/WIEN2K/lapwdmcpara
/home/username/WIEN2K/lapwdmpara
/home/username/WIEN2K/lapwdmpara_lapw
/home/username/WIEN2K/lapwso
/home/username/WIEN2K/lapwsocpara
/home/username/WIEN2K/lapwso_mpi
/home/username/WIEN2K/lapwsopara
/home/username/WIEN2K/lapwsopara_lapw</p>
<p style="margin-bottom:0cm;line-height:100%">ssh vlsi1
'echo
$WIENROOT/lapw*'</p>
<p style="margin-bottom:0cm;line-height:100%">/home/username/WIEN2K/lapw0
/home/username/WIEN2K/lapw0_mpi
/home/username/WIEN2K/lapw0para
/home/username/WIEN2K/lapw0para_lapw
/home/username/WIEN2K/lapw1
/home/username/WIEN2K/lapw1c
/home/username/WIEN2K/lapw1c_mpi
/home/username/WIEN2K/lapw1cpara
/home/username/WIEN2K/lapw1_mpi
/home/username/WIEN2K/lapw1para
/home/username/WIEN2K/lapw1para_lapw
/home/username/WIEN2K/lapw2 /home/username/WIEN2K/lapw2c
/home/username/WIEN2K/lapw2c_mpi
/home/username/WIEN2K/lapw2cpara
/home/username/WIEN2K/lapw2_mpi
/home/username/WIEN2K/lapw2para
/home/username/WIEN2K/lapw2para_lapw
/home/username/WIEN2K/lapw3
/home/username/WIEN2K/lapw3c /home/username/WIEN2K/lapw5
/home/username/WIEN2K/lapw5c /home/username/WIEN2K/lapw7
/home/username/WIEN2K/lapw7c
/home/username/WIEN2K/lapwdm
/home/username/WIEN2K/lapwdmc
/home/username/WIEN2K/lapwdmcpara
/home/username/WIEN2K/lapwdmpara
/home/username/WIEN2K/lapwdmpara_lapw
/home/username/WIEN2K/lapwso
/home/username/WIEN2K/lapwsocpara
/home/username/WIEN2K/lapwso_mpi
/home/username/WIEN2K/lapwsopara
/home/username/WIEN2K/lapwsopara_lapw</p>
<p style="margin-bottom:0cm;line-height:100%"><br>
</p>
<p style="margin-bottom:0cm;line-height:100%">However
getting the same error <br>
</p>
<table bgcolor="#c3ffd2">
<tbody>
<tr>
<td bgcolor="#E0E0E0">
<form action="http:///util/stdout.pl" method="POST">
</form>
<br>
</td>
<td bgcolor="#E0E0E0">
<br>
</td>
</tr>
</tbody>
</table>
<pre>> stop error
grep: *scf1*: No such file or directory
cp: cannot stat '.in.tmp': No such file or directory
FERMI - Error
grep: *scf1*: No such file or directory
Parallel.scf1_1: No such file or directory.
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
LAPW0 END
hup: Command not found.</pre>
<p style="margin-bottom:0cm;line-height:100%">
</p>
<p style="margin-bottom:0cm;line-height:100%"><br>
</p>
<p style="margin-bottom:0cm;line-height:100%">and lapw2
error file <br>
</p>
<p style="margin-bottom:0cm;line-height:100%"> 'LAPW2' -
can't open unit: 30
<br>
'LAPW2' - filename: Parallel.energy_1
<br>
** testerror: Error in Parallel LAPW2<br>
</p>
</div>
<div><br>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sat, Sep 28, 2019 at
11:58 PM Gavin Abo <<a href="mailto:gsabo@crimson.ua.edu" rel="noreferrer" target="_blank">gsabo@crimson.ua.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p><font face="Times New Roman">The "<font color="#ff0000">sudo service sshd restart</font>"
step, which I forgot to copy and paste, that is
missing is corrected below.</font><br>
</p>
<div>On 9/28/2019 12:18 PM, Gavin Abo wrote:<br>
</div>
<blockquote type="cite">
<p>After you set both "SendEnv *" and "AcceptEnv *",
did you restart the sshd service [1]? The following
illustrates steps that might help you verify that
WIENROOT appears on a remote vlsi node:<br>
</p>
<p>username@computername:~$ echo $WIENROOT<br>
<br>
username@computername:~$ export
WIENROOT=/servernode1<br>
username@computername:~$ echo $WIENROOT<br>
/servernode1<br>
username@computername:~$ ssh vlsi<br>
Welcome to Ubuntu 18.04.3 LTS (GNU/Linux
4.15.0-64-generic x86_64)<br>
... <br>
Last login: Sat Sep 28 12:04:07 2019 from xxx.x.x.x<br>
username@computername:~$ echo $WIENROOT<br>
<br>
username@computername:~$ exit<br>
logout<br>
Connection to vlsi closed.<br>
username@computername:~$ sudo gedit
/etc/ssh/ssh_config <br>
[sudo] password for username: <br>
<br>
username@computername:~$ sudo gedit
/etc/ssh/sshd_config <br>
<br>
username@computername:~$ grep SendEnv
/etc/ssh/ssh_config<br>
SendEnv LANG LC_* WIENROOT<br>
username@computername:~$ grep AcceptEnv
/etc/ssh/sshd_config<br>
AcceptEnv LANG LC_* WIENROOT<br>
</p>
</blockquote>
username@computername:~$ <font color="#ff0000">sudo
service sshd restart</font><br>
<blockquote type="cite">
<p> username@computername:~$ ssh vlsi<br>
...<br>
username@computername:~$ echo $WIENROOT<br>
/servernode1<br>
username@computername:~$ exit<br>
</p>
<p>[1] <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__askubuntu.com_questions_462968_take-2Dchanges-2Din-2Dfile-2Dsshd-2Dconfig-2Dfile-2Dwithout-2Dserver-2Dreboot&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=FLliCLwqxudgCchv5BCSfVP-J7BhHgTh4n7QZlioHSc&e=" rel="noreferrer" target="_blank">https://askubuntu.com/questions/462968/take-changes-in-file-sshd-config-file-without-server-reboot</a><br>
</p>
<div>On 9/28/2019 11:22 AM, Indranil mal wrote:<br>
</div>
<blockquote type="cite">
<div dir="auto">
<div>Sir I have tried with " SetEnv * " Still
nothing is coming with echo commad and user
name by mistake I posted wrong Otherwise no
issue with user name and I have set the parallel
options file taksset "no" and remote options are
1 1 in server and client machines. </div>
<div dir="auto"><br>
<br>
<div class="gmail_quote" dir="auto">
<div dir="ltr" class="gmail_attr">On Sat, 28
Sep 2019 11:36 Gavin Abo, <<a href="mailto:gsabo@crimson.ua.edu" rel="noreferrer" target="_blank">gsabo@crimson.ua.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<blockquote type="cite">
<div dir="ltr">
<div>Respected Sir, In my linux(Ubuntu
18.04 LTS) in ssh_config, and in
sshd_config there are two line
already "SendEnv LANG LC_*"
"AcceptEnv LANG LC_*" respectively.
</div>
</div>
</blockquote>
<p><font color="#000099">The "LANG LC_*"
probably only puts just the local
language variables in the remote
environment. Did you follow the
previous advice [1] of trying to use
"*" to put all variables from the
local environment?</font></p>
<p><font color="#000099">[1] <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_msg19049.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=F2Kzs7Ld5paBoEnONGhjuu1Gkmmzcm97Ym-J9K4SEZI&e=" rel="noreferrer noreferrer" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19049.html</a><br>
</font></p>
<blockquote type="cite">
<div dir="ltr">
<div>However, ssh vsli1 'echo
$WIENROOT' gives nothing (blank).</div>
</div>
</blockquote>
<p><font color="#000099">That seems to be
the main cause of the problem as it
should not return (blank) but needs to
return "/servernode1" as you
previously mentioned [2].</font></p>
<p><font color="#000099">[2] <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_msg19036.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=vGl31Rca7NV32sDbba9qX9Fj6fpuj8KtDG8FBeL1emI&e=" rel="noreferrer noreferrer" target="_blank">https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html</a></font></p>
<p><font color="#000099">Perhaps the
message below is a clue. It you had
set the WIENROOT variable in .bashrc
of your /home/vlsi accounts on each
system, you likely have to login and
use that same </font><font color="#000099"><font color="#000099">/home/vlsi
</font>account on the head node as the
output below seems to indicate login
to a different /home/niel account.
Alternatively, setting the WIENROOT
variable in .bashrc of all /home/niel
accounts on each node might work too.</font><br>
</p>
<blockquote type="cite">
<div dir="ltr">
<div> The command ssh vsli1 'pwd
$WIENROOT' print "/home/vlsi" the
common home directory and <br>
</div>
<div>ssh vlsi1 "env"</div>
...<br>
USER=niel<br>
PWD=/home/niel<br>
HOME=/home/niel<br>
...<br>
<div>this is similar as server, and
other nodes.</div>
<div><br>
</div>
<div>Sir After changing the parallel
option file in $WIENROOT in server
to <br>
</div>
<div><br>
</div>
<div>setenv TASKSET <span style="color:rgb(255,0,0)"><b>"yes"
from "no"</b></span><br>
if ( ! $?USE_REMOTE ) setenv
USE_REMOTE 1<br>
if ( ! $?MPI_REMOTE ) setenv
MPI_REMOTE 1<br>
setenv WIEN_GRANULARITY 1<br>
setenv DELAY 0.1<br>
setenv SLEEPY 1<br>
setenv WIEN_MPIRUN "mpirun -np _NP_
-machinefile _HOSTS_ _EXEC_"<br>
setenv CORES_PER_NODE 1<br>
</div>
<div><br>
</div>
<div>the error is not coming but the
program is not increasing steps
after lapw0 it stuck in lapw1<br>
</div>
</div>
</blockquote>
<p><font color="#000099">Since it seemed
to be throwing an appropriate error
message with TASKSET previously unlike
when set to "yes", probably you should
change it back to "no".</font><br>
</p>
</div>
</blockquote>
</div>
</div>
</div>
</blockquote>
</blockquote>
</div>
</blockquote>
</div>
</blockquote>
</div>
</blockquote>
<blockquote type="cite"></blockquote>
</div>
_______________________________________________<br>
Wien mailing list<br>
<a href="mailto:Wien@zeus.theochem.tuwien.ac.at" target="_blank">Wien@zeus.theochem.tuwien.ac.at</a><br>
<a href="http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien" rel="noreferrer" target="_blank">http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien</a><br>
SEARCH the MAILING-LIST at: <a href="http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html" rel="noreferrer" target="_blank">http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html</a><br>
</blockquote></div></div>