[Wien] About the machines file for mpi
liyh
lyhua at fudan.edu.cn
Sat Jan 22 09:30:28 CET 2005
Dear Blaha,
I am still not very clear about your suggest.
For example, for a large system, we use 2 k-points, and 4 nodes. then the .machines file should like this?
granularity:1
1:comp1 comp2
1:comp3 comp4
residue:comp1
lapw0:comp1 comp2 comp3 comp4
Thank you!
Yonghua
>Yes, your .machines file means you are running lapw0 on those two machines
>in paralllel and then distribute the k-points into two sets, and each
>k-point is calculated on two machnies in mpi-parallel mode.
>Of course your .machines file does NOT make sense.
>You should first try to distribute the k-points (because this is very
>efficient) and you should not use the same machines for k-point AND
>mpi-parallel mode (your example runs 2 lapw1_mpi jobs on each of those
>machines).
>
>PS: I think the description of the .machines file is pretty exhausting in
>the UG and shows almost all possible combinations of cluster and shared
>memory machines.
>
>> Do you means if I have two k-points the machines file should like this?
>> #For lapw0_mpi
>> lapw0: comp124 comp123
>> #For lapw1_mpi/lapw2_mpi
>> 1:comp124 comp123
>> 2:comp124 comp123
>> Does it correct?
>> I have looked the UG, it is very simple and only give the example for k-points parrel, but not for mpi.
>>
>> Yonghua
>>
>> >Please have a look at page 61 in the UG.
>> >
>> >The lapw0 line must be a single line like
>> >
>> >lapw0:comp124 comp123 comp80 ...
>> >
>> >For lapw1 AND lapw2 again for each k-point you must use a single line only
>> >like:
>> >
>> >1:comp124 comp123 comp80 ...
>> >
>> >
>> >
>> >> I want to run wien2k in parallel using mpi method. But I dont know how to creat the .machines file. This is part of our script file for pbs submitting.
>> >> ...........
>> >> this is the created .machines file by this script.
>> >>
>> >> lapw0:comp124
>> >> comp123
>> >> comp80
>> >> comp120
>> >> comp69
>> >> comp127
>> >> lapw1:comp124
>> >> comp123
>> >> comp80
>> >> comp120
>> >> comp69
>> >> comp127
>> >> lapw2:comp124
>> >> comp123
>> >> comp80
>> >> comp120
>> >> comp69
>> >> comp127
>> >>
>> >> Does it correct? Could you give me some sugest?
>> >>
>> >> Best Wish to You!
>> >>
>> >> Yonghua
>> >>
>> >> _______________________________________________
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>> >> Wien at zeus.theochem.tuwien.ac.at
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>> >>
>> >
>> >
>> > P.Blaha
>> >--------------------------------------------------------------------------
>> >Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
>> >Phone: +43-1-58801-15671 FAX: +43-1-58801-15698
>> >Email: blaha at theochem.tuwien.ac.at WWW: http://info.tuwien.ac.at/theochem/
>> >--------------------------------------------------------------------------
>> >
>> >_______________________________________________
>> >Wien mailing list
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>> = = = = = = = = = = = = = = = = = = = =
>>
>>
>> ?
>> ?!
>>
>>
>> liyh
>> lyhua at fudan.edu.cn
>> 2005-01-22
>>
>>
>> _______________________________________________
>> Wien mailing list
>> Wien at zeus.theochem.tuwien.ac.at
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>>
>
>
> P.Blaha
>--------------------------------------------------------------------------
>Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
>Phone: +43-1-58801-15671 FAX: +43-1-58801-15698
>Email: blaha at theochem.tuwien.ac.at WWW: http://info.tuwien.ac.at/theochem/
>--------------------------------------------------------------------------
>
>_______________________________________________
>Wien mailing list
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致
礼!
liyh
lyhua at fudan.edu.cn
2005-01-22
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