[Wien] How to free the memory after a parallel session?

L. D. Marks L-marks at northwestern.edu
Mon Mar 20 14:24:49 CET 2006


Are you sure the run worked? If not, this might be a source. Otherwise, 
I've been told that this is often normal in Linux and memory will be freed 
up when needed. (There are some kernel tweaks that can be done, but this 
is very system specific.) If you were running mpi and it crashed, 
sometimes "cluster-fork sh /opt/mpich/gnu/sbin/cleanipcs"
will help.

N.B., if everything is working OK, it ain't broke so don't try and fix 
this.

N.N.B., there is an outside chance it could be due to mkl; from 
http://www.intel.com/software/products/mkl/docs/mklusel.htm there is a 
routine MKL_FreeBuffers() which should probably be called before the code
terminates, assuming that you are using mkl.


On Sat, 18 Mar 2006, Mahmoud Payami wrote:

>
>
>
> Dear All,
> After a parallel session, the memories of all nodes become saturated (without any use).
> How can I free them without rebooting?
> I would be grateful if anybody gives some hints.
> Bests,
>          mahmoud
>
>
>

Note: if you have an old email address for me, please note that "nwu" has
been changed to "northwestern".
-----------------------------------------------
Laurence Marks
Department of Materials Science and Engineering
MSE Rm 2036 Cook Hall
2220 N Campus Drive
Northwestern University
Evanston, IL 60201, USA
Tel: (847) 491-3996 Fax: (847) 491-7820
email: L-marks at northwestern dot edu
http://www.numis.northwestern.edu
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