[Wien] Segmentation fault in pairhess with constrains
Oleg Rubel
rubelo at tbh.net
Tue Dec 8 16:42:31 CET 2009
Dear Wien2k Users and Developers,
I attempt to model a cleaved surface of trigonal selenium terminated by Li atoms using WIEN2k_09.2 (Release 29/9/2009). In the calculation I would like to constrain the position of Se-atoms and let Li-atoms to relax free. I prepared my case.inM accordingly (atom 1 - Li, atoms 2-8 - Se):
[oleg at feynman t-Se]$ cat t-Se.inM
PORT 2.00 0.35 # PORT/NEWT; tolf, Initial Trust Radius
1.0 1.0 1.0 1.0 #Atom 1 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 2 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 3 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 4 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 5 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 6 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 7 Generated by pairhess
0.0 0.0 0.0 1.0 #Atom 8 Generated by pairhess
Then I run pairhess and get segmentation fault (the error file does not contain any useful information.)
[oleg at feynman t-Se]$ x pairhess
case.inM present and used for constrains
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
pairhess 0000000000413299 Unknown Unknown Unknown
pairhess 0000000000409A9C Unknown Unknown Unknown
libc.so.6 0000003F9161D8B4 Unknown Unknown Unknown
pairhess 00000000004099A9 Unknown Unknown Unknown
0.096u 0.177s 0:00.91 28.5% 0+0k 0+0io 4pf+0w
error: command /home/oleg/WIEN2k_09.2.mkl_10_IB_MVAPICH2/pairhess pairhess.def failed
Then I tried an older version of WIEN2k_08.3 (Release 18/9/2008), and it works
[oleg at feynman t-Se]$ x pairhess
PORT 0
case.inM present and used for constrains
Max min of Eigenvalues 1.41645881505472 1.58354118615782
Max min of I-H Eigen -0.583541186157820 -0.416458815054722
Free elements condition number 1.11795780570241
Condition number 0.15835D+01 for 3 variables; Cond/sqrt(N)= 0.91426D+00
Check .minpair, the estimate, and output in
/home/oleg/PROJECTS/TRIGONAL-Se.DEF-POTENTIAL/WIEN2K/t-Se.SURFACE-UNSTRAINED/t-
S
PairHess END
0.001u 0.003s 0:00.10 0.0% 0+0k 0+0io 4pf+0w
I should mention that without constrains pairhess of WIEN2k_09.2 (Release 29/9/2009) runs error-free. I know that pairhess has recently undergone some major changes. Could it be that a bug was introduced? I enclose my case.struct and case.inM just in case of anyone would like to reproduce the error.
Thank you very much in advance.
Oleg Rubel
--
Oleg Rubel, PhD
Scientist
Thunder Bay Regional Research Institute
290 Munro St
Thunder Bay, ON
P7A 7T1, Canada
Phone: +1-807-7663350
Fax: +1-807-3441948
E-mail: rubelo at tbh.net
Homepage: http://www.tbrri.com/~orubel/
-------------- next part --------------
A non-text attachment was scrubbed...
Name: t-Se.inM
Type: application/octet-stream
Size: 469 bytes
Desc: not available
URL: <http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20091208/93ebb410/attachment.dll>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: t-Se.struct
Type: application/octet-stream
Size: 3381 bytes
Desc: not available
URL: <http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20091208/93ebb410/attachment-0001.dll>
More information about the Wien
mailing list