[Wien] Segmentation fault in pairhess with constrains
Laurence Marks
L-marks at northwestern.edu
Tue Dec 8 18:22:52 CET 2009
I know this bug and I believe it has been cured in the version that is
on the web -- please download just pairhess from the web page (I am
currently on travel so cannot do this simply).
2009/12/8 Oleg Rubel <rubelo at tbh.net>:
> Dear Wien2k Users and Developers,
>
> I attempt to model a cleaved surface of trigonal selenium terminated by Li atoms using WIEN2k_09.2 (Release 29/9/2009). In the calculation I would like to constrain the position of Se-atoms and let Li-atoms to relax free. I prepared my case.inM accordingly (atom 1 - Li, atoms 2-8 - Se):
>
> [oleg at feynman t-Se]$ cat t-Se.inM
> PORT 2.00 0.35 # PORT/NEWT; tolf, Initial Trust Radius
> 1.0 1.0 1.0 1.0 #Atom 1 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 2 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 3 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 4 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 5 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 6 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 7 Generated by pairhess
> 0.0 0.0 0.0 1.0 #Atom 8 Generated by pairhess
>
> Then I run pairhess and get segmentation fault (the error file does not contain any useful information.)
>
> [oleg at feynman t-Se]$ x pairhess
> case.inM present and used for constrains
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image PC Routine Line Source
> pairhess 0000000000413299 Unknown Unknown Unknown
> pairhess 0000000000409A9C Unknown Unknown Unknown
> libc.so.6 0000003F9161D8B4 Unknown Unknown Unknown
> pairhess 00000000004099A9 Unknown Unknown Unknown
> 0.096u 0.177s 0:00.91 28.5% 0+0k 0+0io 4pf+0w
> error: command /home/oleg/WIEN2k_09.2.mkl_10_IB_MVAPICH2/pairhess pairhess.def failed
>
> Then I tried an older version of WIEN2k_08.3 (Release 18/9/2008), and it works
>
> [oleg at feynman t-Se]$ x pairhess
> PORT 0
> case.inM present and used for constrains
> Max min of Eigenvalues 1.41645881505472 1.58354118615782
> Max min of I-H Eigen -0.583541186157820 -0.416458815054722
> Free elements condition number 1.11795780570241
> Condition number 0.15835D+01 for 3 variables; Cond/sqrt(N)= 0.91426D+00
> Check .minpair, the estimate, and output in
> /home/oleg/PROJECTS/TRIGONAL-Se.DEF-POTENTIAL/WIEN2K/t-Se.SURFACE-UNSTRAINED/t-
> S
> PairHess END
> 0.001u 0.003s 0:00.10 0.0% 0+0k 0+0io 4pf+0w
>
> I should mention that without constrains pairhess of WIEN2k_09.2 (Release 29/9/2009) runs error-free. I know that pairhess has recently undergone some major changes. Could it be that a bug was introduced? I enclose my case.struct and case.inM just in case of anyone would like to reproduce the error.
>
> Thank you very much in advance.
>
> Oleg Rubel
>
> --
> Oleg Rubel, PhD
> Scientist
> Thunder Bay Regional Research Institute
> 290 Munro St
> Thunder Bay, ON
> P7A 7T1, Canada
> Phone: +1-807-7663350
> Fax: +1-807-3441948
> E-mail: rubelo at tbh.net
> Homepage: http://www.tbrri.com/~orubel/
>
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>
>
--
Laurence Marks
Department of Materials Science and Engineering
MSE Rm 2036 Cook Hall
2220 N Campus Drive
Northwestern University
Evanston, IL 60208, USA
Tel: (847) 491-3996 Fax: (847) 491-7820
email: L-marks at northwestern dot edu
Web: www.numis.northwestern.edu
Chair, Commission on Electron Crystallography of IUCR
www.numis.northwestern.edu/
Electron crystallography is the branch of science that uses electron
scattering and imaging to study the structure of matter.
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