[Wien] Seg Fault during Bandstructure Calculation

Aaron Sutton asutton at physics.utoronto.ca
Thu Apr 26 23:04:49 CEST 2012


Oddly, the compiler is adding the -c by itself. It is not explicitly
declared in the list of options. I'm unable to figure out why it's
doing that. Removing -ip and compiling with -O0...-O3 has the same
result as before.

----------------------------------------------------------------------------
Aaron Sutton
Ph.D. Candidate | University of Toronto
Office: McLennan MP090 | Phone: +1 416 946 3639
Email: asutton at physics.utoronto.ca


On Thu, Apr 26, 2012 at 16:15, Fecher, Gerhard <fecher at uni-mainz.de> wrote:
> also drop the -ip
> then you may try again with otimization increase from -O0 to -O1 etc... to -O3
> I have never seen the ipo warning on PC-Linux using 11.1.084, maybe its a MAC specific problem of the compiler
>
> Ciao
> Gerhard
>
>
> ====================================
> Dr. Gerhard H. Fecher
> Institut of Inorganic and Analytical Chemistry
> Johannes Gutenberg - University
> 55099 Mainz
> ________________________________________
> Von: wien-bounces at zeus.theochem.tuwien.ac.at [wien-bounces at zeus.theochem.tuwien.ac.at]&quot; im Auftrag von &quot;Gavin Abo [gsabo at crimson.ua.edu]
> Gesendet: Donnerstag, 26. April 2012 21:57
> An: A Mailing list for WIEN2k users
> Betreff: Re: [Wien] Seg Fault during Bandstructure Calculation
>
> I think you can ignore the two warnings below in the shortened
> compile.msg file for spaghetti that you sent me off the list.
>
> I notice one thing that seems to be strange. It shows that you have "-c"
> for a compile option, which prevents linking. Try changing it to the
> upper case "-C" for runtime error checking.
>
> On 4/26/2012 2:08 PM, Aaron Sutton wrote:
> I recompiled with the -g debug option you mentioned and still got the
> exact same error. No
> additional information is presented. Here is the output of the
> compiling process, showing no major errors and only two warnings which
> I believe can safely be ignored.
>
> ➜ SRC_spaghetti make
> ifort -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML -O1 -traceback
> -g -c reallocate.f
> ...
> ifort -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML -O1 -traceback
> -g -c wrtdate.f
> ifort -o ./spaghetti reallocate.o modules.o bndind.o bz_lin.o cartco.o
> clipin.o comprel.o con_ev.o defins.o drawt.o get_ei.o get_k.o
> inview.o movet.o pgrpnr.o pointi.o psend.o psinit.o spag.o seppt.o
> transt.o writln.o writs.o writz.o wrtdate.o -FR -mp1 -w -prec_div
> -pc80 -pad -ip -DINTEL_VML -O1 -traceback -g
> -L/opt/intel/Compiler/11.1/084/Frameworks/mkl/lib/em64t -pthread
> ipo: warning #11015: Warning unknown option -no_compact_unwind
> ld: warning: -macosx_version_min not specificed, assuming 10.7
>
> On 4/26/2012 2:39 PM, Aaron Sutton wrote:
>> Hi,
>> So I recompiled spaghetti with -O0 and -C, both still result in the
>> same error as previously mentioned. The only change was using -O0 I
>> did not receive the "ipo: warning #11015: Warning unknown option
>> -no_compact_unwind" warning. I did still receive it using -C. Should I
>> recompile all of the programs or is it sufficient to just recompile
>> spaghetti?
>>
>> ----------------------------------------------------------------------------
>> Aaron Sutton
>> Ph.D. Candidate | University of Toronto
>> Office: McLennan MP090 | Phone: +1 416 946 3639
>> Email: asutton at physics.utoronto.ca
>>
>>
>> On Thu, Apr 26, 2012 at 15:27, Peter Blaha<pblaha at theochem.tuwien.ac.at>  wrote:
>>> Please recompile with -O0  or with -C
>>>
>>> Maybe another manifestation of a ifort compiler bug.
>>>
>>> Am 26.04.2012 18:51, schrieb Georg Eickerling:
>>>
>>>> Dear WIEN users,
>>>>
>>>> I am joining this thread as I have exacly the same problem right now.
>>>>
>>>> Everything with the case works fine, SCF, DOS, densities etc. the only
>>>> failure is (im using the command line):
>>>>
>>>> after successfully running lapw1 -band (and lapw2 -qtl -band optionally):
>>>>
>>>> # x spaghetti
>>>>
>>>> Segmentation fault
>>>> 0.056u 0.028s 0:00.08 87.5%     0+0k 0+8io 0pf+0w
>>>> error: command   /usr/users/eickerling/prog/wien2k11/spaghetti
>>>> spaghetti.def   failed
>>>>
>>>> When I copy the exact same case-files to another machine spaghetti works
>>>> without problems, so I can exclude a input-error.
>>>>
>>>> I can reproduce the problem with both versions, wien2k10 and wien2k11
>>>> and in both cases spaghetti compiled without errors.
>>>>
>>>>
>>>> regards
>>>>
>>>> Georg Eickerling
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On 26.04.2012 17:04, Aaron Sutton wrote:
>>>>> Hi,
>>>>> Posted about this a few days ago but got no response. I'm having an
>>>>> issue running spaghetti. When executing x spaghetti from w2web, I
>>>>> immediately receive the following:
>>>>>
>>>>> Commandline: x spaghetti
>>>>> Program input is: ""
>>>>>
>>>>> Segmentation fault
>>>>> 0.072u 0.035s 0:00.43 23.2%     0+0k 0+4io 84pf+0w
>>>>> error: command   /Applications/WIEN2K/spaghetti spaghetti.def   failed
>>>>>
>>>>> No errors are given when running lawp1 -band from w2web or the command
>>>>> line. The k-mesh was created using XCrysDen. Any input into this issue
>>>>> would be greatly appreciated as I've made no progress on it in days.
>>>>>
>>>>> Thanks.
>>>>>
>>>>> ----------------------------------------------------------------------------
>>>>> Aaron Sutton
>>>>> Ph.D. Candidate | University of Toronto
>>>>> Office: McLennan MP090 | Phone: +1 416 946 3639
>>>>> Email: asutton at physics.utoronto.ca
>>>>> _______________________________________________
>>>>> Wien mailing list
>>>>> Wien at zeus.theochem.tuwien.ac.at
>>>>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>>
>>>> _______________________________________________
>>>> Wien mailing list
>>>> Wien at zeus.theochem.tuwien.ac.at
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>>>
>>> --
>>> -----------------------------------------
>>> Peter Blaha
>>> Inst. Materials Chemistry, TU Vienna
>>> Getreidemarkt 9, A-1060 Vienna, Austria
>>> Tel: +43-1-5880115671
>>> Fax: +43-1-5880115698
>>> email: pblaha at theochem.tuwien.ac.at
>>> -----------------------------------------
>>>
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>>> Wien mailing list
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