[Wien] Seg Fault during Bandstructure Calculation
Gavin Abo
gsabo at crimson.ua.edu
Fri Apr 27 05:37:46 CEST 2012
I got to checking my linux system and -c (lowercase) in the compile.msg
is normal. Sorry about that.
Lion (Mac OS 10.7) is supported by the latest Update 10 release of
Fortran Composer XE 2011 for Mac OS X. Until you update, your on your
own because quoting Intel:
"Compilers versions 11.1 and older are known to NOT work under Lion, and
these older compilers will not be updated to work for Lion."
-http://software.intel.com/en-us/articles/intel-compiler-support-for-mac-os-x-107-and-xcode-41/
Also, you have to use the following compiler options for debugging on Lion:
-g -save-temps -fpic -Wl,-no_pie
described at
http://software.intel.com/en-us/articles/using-the-idb-debugger-under-mac-os-x-107-lion/
On 4/26/2012 4:04 PM, Aaron Sutton wrote:
> Oddly, the compiler is adding the -c by itself. It is not explicitly
> declared in the list of options. I'm unable to figure out why it's
> doing that. Removing -ip and compiling with -O0...-O3 has the same
> result as before.
>
> ----------------------------------------------------------------------------
> Aaron Sutton
> Ph.D. Candidate | University of Toronto
> Office: McLennan MP090 | Phone: +1 416 946 3639
> Email: asutton at physics.utoronto.ca
>
>
> On Thu, Apr 26, 2012 at 16:15, Fecher, Gerhard<fecher at uni-mainz.de> wrote:
>> also drop the -ip
>> then you may try again with otimization increase from -O0 to -O1 etc... to -O3
>> I have never seen the ipo warning on PC-Linux using 11.1.084, maybe its a MAC specific problem of the compiler
>>
>> Ciao
>> Gerhard
>>
>>
>> ====================================
>> Dr. Gerhard H. Fecher
>> Institut of Inorganic and Analytical Chemistry
>> Johannes Gutenberg - University
>> 55099 Mainz
>> ________________________________________
>> Von: wien-bounces at zeus.theochem.tuwien.ac.at [wien-bounces at zeus.theochem.tuwien.ac.at]" im Auftrag von"Gavin Abo [gsabo at crimson.ua.edu]
>> Gesendet: Donnerstag, 26. April 2012 21:57
>> An: A Mailing list for WIEN2k users
>> Betreff: Re: [Wien] Seg Fault during Bandstructure Calculation
>>
>> I think you can ignore the two warnings below in the shortened
>> compile.msg file for spaghetti that you sent me off the list.
>>
>> I notice one thing that seems to be strange. It shows that you have "-c"
>> for a compile option, which prevents linking. Try changing it to the
>> upper case "-C" for runtime error checking.
>>
>> On 4/26/2012 2:08 PM, Aaron Sutton wrote:
>> I recompiled with the -g debug option you mentioned and still got the
>> exact same error. No
>> additional information is presented. Here is the output of the
>> compiling process, showing no major errors and only two warnings which
>> I believe can safely be ignored.
>>
>> ➜ SRC_spaghetti make
>> ifort -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML -O1 -traceback
>> -g -c reallocate.f
>> ...
>> ifort -FR -mp1 -w -prec_div -pc80 -pad -ip -DINTEL_VML -O1 -traceback
>> -g -c wrtdate.f
>> ifort -o ./spaghetti reallocate.o modules.o bndind.o bz_lin.o cartco.o
>> clipin.o comprel.o con_ev.o defins.o drawt.o get_ei.o get_k.o
>> inview.o movet.o pgrpnr.o pointi.o psend.o psinit.o spag.o seppt.o
>> transt.o writln.o writs.o writz.o wrtdate.o -FR -mp1 -w -prec_div
>> -pc80 -pad -ip -DINTEL_VML -O1 -traceback -g
>> -L/opt/intel/Compiler/11.1/084/Frameworks/mkl/lib/em64t -pthread
>> ipo: warning #11015: Warning unknown option -no_compact_unwind
>> ld: warning: -macosx_version_min not specificed, assuming 10.7
>>
>> On 4/26/2012 2:39 PM, Aaron Sutton wrote:
>>> Hi,
>>> So I recompiled spaghetti with -O0 and -C, both still result in the
>>> same error as previously mentioned. The only change was using -O0 I
>>> did not receive the "ipo: warning #11015: Warning unknown option
>>> -no_compact_unwind" warning. I did still receive it using -C. Should I
>>> recompile all of the programs or is it sufficient to just recompile
>>> spaghetti?
>>>
>>> ----------------------------------------------------------------------------
>>> Aaron Sutton
>>> Ph.D. Candidate | University of Toronto
>>> Office: McLennan MP090 | Phone: +1 416 946 3639
>>> Email: asutton at physics.utoronto.ca
>>>
>>>
>>> On Thu, Apr 26, 2012 at 15:27, Peter Blaha<pblaha at theochem.tuwien.ac.at> wrote:
>>>> Please recompile with -O0 or with -C
>>>>
>>>> Maybe another manifestation of a ifort compiler bug.
>>>>
>>>> Am 26.04.2012 18:51, schrieb Georg Eickerling:
>>>>
>>>>> Dear WIEN users,
>>>>>
>>>>> I am joining this thread as I have exacly the same problem right now.
>>>>>
>>>>> Everything with the case works fine, SCF, DOS, densities etc. the only
>>>>> failure is (im using the command line):
>>>>>
>>>>> after successfully running lapw1 -band (and lapw2 -qtl -band optionally):
>>>>>
>>>>> # x spaghetti
>>>>>
>>>>> Segmentation fault
>>>>> 0.056u 0.028s 0:00.08 87.5% 0+0k 0+8io 0pf+0w
>>>>> error: command /usr/users/eickerling/prog/wien2k11/spaghetti
>>>>> spaghetti.def failed
>>>>>
>>>>> When I copy the exact same case-files to another machine spaghetti works
>>>>> without problems, so I can exclude a input-error.
>>>>>
>>>>> I can reproduce the problem with both versions, wien2k10 and wien2k11
>>>>> and in both cases spaghetti compiled without errors.
>>>>>
>>>>>
>>>>> regards
>>>>>
>>>>> Georg Eickerling
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 26.04.2012 17:04, Aaron Sutton wrote:
>>>>>> Hi,
>>>>>> Posted about this a few days ago but got no response. I'm having an
>>>>>> issue running spaghetti. When executing x spaghetti from w2web, I
>>>>>> immediately receive the following:
>>>>>>
>>>>>> Commandline: x spaghetti
>>>>>> Program input is: ""
>>>>>>
>>>>>> Segmentation fault
>>>>>> 0.072u 0.035s 0:00.43 23.2% 0+0k 0+4io 84pf+0w
>>>>>> error: command /Applications/WIEN2K/spaghetti spaghetti.def failed
>>>>>>
>>>>>> No errors are given when running lawp1 -band from w2web or the command
>>>>>> line. The k-mesh was created using XCrysDen. Any input into this issue
>>>>>> would be greatly appreciated as I've made no progress on it in days.
>>>>>>
>>>>>> Thanks.
>>>>>>
>>>>>> ----------------------------------------------------------------------------
>>>>>> Aaron Sutton
>>>>>> Ph.D. Candidate | University of Toronto
>>>>>> Office: McLennan MP090 | Phone: +1 416 946 3639
>>>>>> Email: asutton at physics.utoronto.ca
>>>>>> _______________________________________________
>>>>>> Wien mailing list
>>>>>> Wien at zeus.theochem.tuwien.ac.at
>>>>>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>>> _______________________________________________
>>>>> Wien mailing list
>>>>> Wien at zeus.theochem.tuwien.ac.at
>>>>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>>> --
>>>> -----------------------------------------
>>>> Peter Blaha
>>>> Inst. Materials Chemistry, TU Vienna
>>>> Getreidemarkt 9, A-1060 Vienna, Austria
>>>> Tel: +43-1-5880115671
>>>> Fax: +43-1-5880115698
>>>> email: pblaha at theochem.tuwien.ac.at
>>>> -----------------------------------------
>>>>
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