[Wien] Installation error in parallel mode of wien2k_13
Mamta Chauhan
mamta.chauhan71 at gmail.com
Thu Dec 4 10:30:29 CET 2014
Dear Users,
I am installing wien2k_13 in parallel mode on ubuntu 10.04. For compilation
I used gfortran and gcc options. other options selected were as follows
Recommended options for system linuxgfortran are:
Compiler options: -ffree-form -O2 -ffree-line-length-none
Linker Flags: $(FOPT) -L../SRC_lib
Preprocessor flags: '-DParallel'
R_LIB (LAPACK+BLAS): -llapack_lapw -lblas_lapw -llapack_lapw
-lblas_lapw
Current settings:
O Compiler options: -ffree-form -O2 -ffree-line-length-none
F FFTW options: -DFFTW2 -I/usr/include
L Linker Flags: $(FOPT) -L../SRC_lib
P Preprocessor flags '-DParallel'
R R_LIB (LAPACK+BLAS): -llapack_lapw -lblas_lapw -lblas -llapack
FL FFTW_LIBS: -lfftw_mpi -lfftw -L/usr/lib
S Save and Quit
Q Quit abandon changes
Selection: P
**********************************
* Configure parallel execution *
**********************************
These options are stored in parallel_options of WIENROOT
You can change them later also manually.
Do you use ONLY a shared memory parallel architecture (ONE single
multi-core
node) ?
On shared memory system it is normally better to start jobs in the
background rather than using remote commands. If you select a shared
memory
system WIEN will by default not use remote shell commands
(USE_REMOTE and MPI_REMOTE = 0 in parallel_options)
and set the default granularity to 1.
You still can override this default granularity in your .machines file.
You may also set a specific TASKSET command to bind your executables
to a specific core on multicore machines.
Shared Memory Architecture? (y/N):y
Do you know/need a command to bind your jobs to specific nodes ?
(like taskset -c). Enter N / your_specific_command: n
********************************************************
Do you have MPI, Scalapack and FFTW installed and intend to run
finegrained parallel?
This is useful only for BIG cases (50 atoms and more / unit cell)
and your HARDWARE has at least 16 cores (or is a cluster with Infiniband)
You need to KNOW details about your installed MPI and FFTW )
(y/n) y
Recommended setting for parallel f90 compiler: mpif90
Current selection:
Your compiler: mpif90
Finding the required fftw2/3 mpi-files in /usr and /opt ....
could not find fftw3 ....
/usr/lib/libfftw_mpi.a
Your present FFTW choice is: FFTW2
Please specify whether you want to use FFTW3 (default) or FFTW2 (FFTW3 /
FFTW2): FFTW2
Present FFTWpath is: /usr
Please specify the ROOT-path of your FFTW installation (like /opt/fftw3):
Your FFTW_LIBS are: -lfftw_mpi -lfftw -L/usr/lib
Your FFTW_OPT are : -DFFTW2 -I/usr/include
is this correct? enter Y (default) or n: y
You need to specify MPI and Scalapack libraries in RP_LIBS,
options for parallel compilation in FPOPT
how to run mpi jobs in MPIRUN
(during execution _NP_ will be substituted by the "number of processors"
_EXEC_ by the "executable"
and _HOSTS_ by the machines filename)
Recommended options for system linuxgfortran are:
RP_LIB(SCALAPACK+PBLAS): -L/usr/local/SCALAPACK
-L/usr/local/BLACS/LIB -lpblas -lredist -ltools -lscalapack -lfblacs
-lblacs -lmpi
FPOPT(par.comp.options): -ffree-form -O2 -ffree-line-length-none
MPIRUN commando : mpirun -np _NP_ -machinefile _HOSTS_
_EXEC_
Current settings:
FFTW_LIB + FFTW_OPT : -lfftw_mpi -lfftw -L/usr/lib + -DFFTW2
-I/usr/include (already set)
RP RP_LIB(SCALAPACK+PBLAS): -L/usr/local/SCALAPACK
-L/usr/local/BLACS/LIB -lpblas -lredist -ltools -lscalapack -lfblacs
-lblacs -lmpi
FP FPOPT(par.comp.options): -ffree-form -O2 -ffree-line-length-none
MP MPIRUN commando : mpirun -np _NP_ -machinefile _HOSTS_
_EXEC_
S Save and Quit
Q Quit abandon changes
To change an item select option.
After compilation I got following errors.
Compile time errors (if any) were:
SRC_IRelast/compile.msg:Error: Old-style type declaration REAL*16 not
supported at (1)
SRC_IRelast/compile.msg:make: *** [TWS.o] Error 1
SRC_Tmaker/compile.msg:Error: Nonnegative width required in format string
at (1)
SRC_Tmaker/compile.msg:Error: Nonnegative width required in format string
at (1)
SRC_Tmaker/compile.msg:Error: FORMAT label 1025 at (1) not defined
SRC_Tmaker/compile.msg:Error: FORMAT label 1025 at (1) not defined
SRC_Tmaker/compile.msg:Error: FORMAT label 1007 at (1) not defined
SRC_Tmaker/compile.msg:Error: FORMAT label 1007 at (1) not defined
SRC_Tmaker/compile.msg:make: *** [Tmaker.o] Error 1
SRC_dstart/compile.msg:make[1]: *** [dstart_mpi] Error 1
SRC_dstart/compile.msg:make: *** [para] Error 2
SRC_hf/compile.msg:make[1]: *** [hf_mpi] Error 1
SRC_hf/compile.msg:make: *** [rp] Error 2
SRC_hf/compile.msg:make[1]: *** [hfc_mpi] Error 1
SRC_hf/compile.msg:make: *** [cp] Error 2
SRC_lapw0/compile.msg:Error: Logicals at (1) must be compared with .eqv.
instead of .eq.
SRC_lapw0/compile.msg:make[1]: *** [pwxad5.o] Error 1
SRC_lapw0/compile.msg:make: *** [seq] Error 2
SRC_lapw0/compile.msg:Error: Logicals at (1) must be compared with .eqv.
instead of .eq.
SRC_lapw0/compile.msg:make[1]: *** [pwxad5.o] Error 1
SRC_lapw0/compile.msg:make: *** [para] Error 2
SRC_lapw1/compile.msg:make[1]: *** [lapw1_mpi] Error 1
SRC_lapw1/compile.msg:make: *** [rp] Error 2
SRC_lapw1/compile.msg:make[1]: *** [lapw1c_mpi] Error 1
SRC_lapw1/compile.msg:make: *** [cp] Error 2
SRC_lapw2/compile.msg:make[1]: *** [lapw2_mpi] Error 1
SRC_lapw2/compile.msg:make: *** [rp] Error 2
SRC_lapw2/compile.msg:make[1]: *** [lapw2c_mpi] Error 1
SRC_lapw2/compile.msg:make: *** [cp] Error 2
SRC_lapwso/compile.msg:Error: IF clause at (1) requires a scalar LOGICAL
expression
SRC_lapwso/compile.msg:make[1]: *** [modules.o] Error 1
SRC_lapwso/compile.msg:make: *** [para] Error 2
SRC_nmr/compile.msg:make[1]: *** [nmr_mpi] Error 1
SRC_nmr/compile.msg:make: *** [rp] Error 2
SRC_nmr/compile.msg:make[1]: *** [nmrc_mpi] Error 1
SRC_nmr/compile.msg:make: *** [cp] Error 2
I checked the compile.msg file for example of hf folder I got the found
..........
......
mpif90 -o ./hfc_mpi abc.o add_hvxhfvc.o add_hvxsl_int.o add_hvxsl_sph.o
atpar.o c3fft.o calc_abc_hf.o calc_abc_sl.o calc_cnk.o calc_exhf.o
calc_exhfcc.o calc_exhfvc.o calc_exhfvv.o calc_gaunt.o calc_gaunt_vxsl.o
calc_h.o calc_ifflim.o calc_indices.o calc_overlap_sph.o calc_rhovalvxsl.o
calc_tdde.o calc_tddh.o calc_theta.o calc_ucuchucuc.o calc_uu.o
calc_uuchucu.o calc_uuchucuh.o calc_uuguu.o calc_uuguuh.o calc_uui.o
calc_uuih.o calc_uvxslug.o calc_vxsltheta.o cbcomb.o charg2.o charg3.o
charge.o cputim.o create_stars.o dergl.o diracout.o dvbes1.o errclr.o
errflg.o fftw_seq.o gaunt.o getfft.o gtfnam.o hf.o ifflim.o inouh.o inth.o
latgen.o lomain.o make_alms.o modules.o msbi.o msbj.o msbk.o notri.o
opnfs.o order_cnk.o outerr.o outwin.o ph.o read_cnk.o read_input.o
read_rhoval.o read_struct.o read_uc.o read_vxsl.o read_weight.o rint13.o
rotate.o rotdef.o setfft.o sphbes.o sphi.o sphk.o stern.o t3j.o t3j0.o
W2kinit.o W2kutils.o ylm.o -ffree-form -O2 -ffree-line-length-none -DFFTW2
-I/usr/include -L../SRC_lib -lfftw_mpi -L/usr/local/SCALAPACK
-L/usr/local/BLACS/LIB -lpblas -lredist -ltools -lscalapack -lfblacs
-lblacs -lmpi
/usr/bin/ld: cannot find -lpblas
collect2: ld returned 1 exit status
make[1]: *** [hfc_mpi] Error 1
make[1]: Leaving directory `/home/sosfizix/wien2k/SRC_hf'
make: *** [cp] Error 2
please suggest me whats wrong is there.
Regards
Mamta
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20141204/d3418a39/attachment.html>
More information about the Wien
mailing list