[Wien] error in running .machines file
Gavin Abo
gsabo at crimson.ua.edu
Fri Jun 29 05:35:17 CEST 2018
> [renwei at ln3%th2 ~]$ which mpirun
> /usr/local/mpi3/bin/mpirun
> *31 mpirun: Command not found.*
Similar to the "manpath: command not found" and "libmpi.so.12 => not
found" errors that you say are gone now, the mpirun seems to be
installed okay on one of the nodes but it seems like it is not installed
on all of the nodes such that the cluster administrator should be able
to rectify that too.
> 112 mpirun -n 24 -ppn 24 runsp_lapw -NI -i 200 -ec 0.00001 -cc 0.0001 -p
Regarding the above line used in your job script, it may be that using
mpirun to execute "runsp_lapw -p", where "runsp_lapw -p" will execute
mpirun again might be problematic.
Though, I'm not an expert on slurm, so I could be wrong. The job
scripts I have seen for other clusters would have used a line without
the "mpirun", e.g.:
runsp_lapw -NI -i 200 -ec 0.00001 -cc 0.0001 -p
If you need to adjust the mpirun parameters, I believe you can do that
in siteconfig (or by manually editing the WIEN2k_OPTIONS file).
For example, one way possible way to check what your WIEN2k mpirun
settings are should be to use the following terminal command:
username at computername:~/Desktop$ grep MPIRUN $WIENROOT/WIEN2k_OPTIONS
current:MPIRUN:mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_
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