[Wien] error in running .machines file
Peter Blaha
pblaha at theochem.tuwien.ac.at
Fri Jun 29 07:33:45 CEST 2018
At least on our SLURM system, mpirun is not supported and you have to
use srun instead.
In siteconfig, there is even an option "ifort + slurm"; why not trying
to use these defaults ?
Am 29.06.2018 um 00:23 schrieb venkatesh chandragiri:
> Dear Wien2k users,
>
> I have forwarded the suggestions given by Prof. Gavin as well as Prof.
> Marks to the cluster administrator and now it seems that those earlier
> errors was rectified. However, there are still more errors coming out
> when I am submitting my job into SLURM based queuing process and still
> lapw0 runs successfully but lapw1 crashes.
>
>
> ==========error=========================
> ==========uplapw1.error========
> 1** Error in Parallel LAPW1
> 2 ** LAPW1 STOPPED at Thu Jun 28 09:20:58 CST 2018
> 3 ** check ERROR FILES!
> 4 'INILPW' - can't open unit: 18
> 5 'INILPW' - filename: MnSb2.vspup
> 6 'INILPW' - status: old form: formatted
> 7 'LAPW1' - INILPW aborted unsuccessfully.
> =========================================
>
> ============output============
> *30 begin time is Thu Jun 28 09:20:50 CST 2018*
> * 31 mpirun: Command not found.*
> * 32 setrlimit(): WARNING: Cannot raise stack limit, continuing: Invalid
> argument*
> * 33 LAPW1 - Error*
> * 34 setrlimit(): WARNING: Cannot raise stack limit, continuing: Invalid
> argument*
> * 35 LAPW1 - Error*
> * 36 setrlimit(): WARNING: Cannot raise stack limit, continuing: Invalid
> argument*
> * 37 LAPW1 - Error*
>
> ===========================
>
> ============jobscript ======
>
> After the #SBATCH commands and bash script for .machines
>
> the commands for runsp_lapw is given below
>
> 109 wien2k=`runsp_lapw -NI -i 200 -ec 0.00001 -cc 0.0001 -p`
> 110 #yhrun -N 1 -p sz-renwei -n 24 $wien2k
> 111 #srun $wien2k
> 112 mpirun -n 24 -ppn 24 runsp_lapw -NI -i 200 -ec 0.00001 -cc 0.0001 -p
> 113 #mpirun -np 24 $wien2k
>
> ==========================
>
> we tried to run different set of commands for runsp_lapw. All leads to
> the same error as speified in the output
>
> ==============================
> [renwei at ln3%th2 ~]$ which mpirun
> /usr/local/mpi3/bin/mpirun
> [renwei at ln3%th2 ~]$ whereis mpirun
> mpirun: /opt/mpich/bin/mpirun
> =============================
>
> Is there somthing I am missing to include in mpirun command for SLURM
> queuing system.
>
> please help to find out where the problem is
>
> thank you
>
> with best regards
>
> venkatesh
>
>
>
>
>
> _______________________________________________
> Wien mailing list
> Wien at zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
--
--------------------------------------------------------------------------
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: blaha at theochem.tuwien.ac.at WIEN2k: http://www.wien2k.at
WWW:
http://www.imc.tuwien.ac.at/tc_blaha-------------------------------------------------------------------------
More information about the Wien
mailing list