[Wien] Fwd: Installation issue

Peter Blaha pblaha at theochem.tuwien.ac.at
Mon Apr 29 17:07:21 CEST 2019


Did you do the killing and restart of w2web ???

Am 29.04.2019 um 14:24 schrieb Indranil mal:
> By using the command line "xcrysden --wien_struct case.struct" I can see 
> the structures and the view structure button is also showing in w2web. 
> But When click on the view structure button "Requires X-Windows system 
> ... " message is coming.
> 
> Thanking you
> 
> Indranil
> 
> On Fri, Apr 26, 2019 at 11:02 AM Peter Blaha 
> <pblaha at theochem.tuwien.ac.at <mailto:pblaha at theochem.tuwien.ac.at>> wrote:
> 
>     change into a directory where you have a case.struct file.
>     Can you open it using:
> 
>     xcrysden --wien_struct case.struct
> 
>     If yes, then xcrysden is properly installed. If you do  not see the
>     view
>     structure button in w2web, you have to kill w2web and restart it again:
> 
>     ps -ef|grep w2web   #  this gives you the "PID" of w2web, a number on
>     the left side
>     kill PID            #
> 
>     and repeat the ps command until you do not find w2web anymore. Then
>     start w2web again by typing:
> 
>     w2web
> 
>     Regards
> 
>     Am 26.04.2019 um 06:00 schrieb Indranil mal:
>      > I have followed your suggestion and it is working except the
>     xcrysden is
>      > not linked, can not view structures.
>      >
>      > dps at dps-lab:~$ whereis xcrysden
>      > xcrysden: /usr/bin/xcrysden /usr/lib/xcrysden /usr/share/xcrysden
>      > /home/dps/WIEN2K/xcrysden /usr/share/man/man1/xcrysden.1.gz
>      >
>      > XCRYSDEN_TOPDIR=/usr/share/xcrysden
>      > XCRYSDEN_SCRATCH=/home/dps/xcrys_tmp
>      >
>      > unable to edit the top directory. However I have installed
>     xcrysden from
>      > UBUNTU software library.
>      >
>      >
>      > Thanking you
>      >
>      > Indranil
>      >
>      >
>      > On Tue, Apr 23, 2019 at 6:41 PM Peter Blaha
>      > <pblaha at theochem.tuwien.ac.at
>     <mailto:pblaha at theochem.tuwien.ac.at>
>     <mailto:pblaha at theochem.tuwien.ac.at
>     <mailto:pblaha at theochem.tuwien.ac.at>>> wrote:
>      >
>      >     I suggest that you first do only the sequential installation.
>      >
>      >     For this (and for your hardware) you don't need mpi,
>     scalapack or elpa.
>      >
>      >     Change into SRC_lapw0 and inspect the compile.msg file in
>     more detail.
>      >     You may see more informative messages then what you posted.
>      >
>      >     You can also recompile again simply by typing "make" in
>     SRC_lapw0.
>      >
>      >     PS: If this was the only error in siteconfig after
>     compilation of all
>      >     programs, it might be your libxc installation. (remove
>     -DLIBXC, and the
>      >     corresponding includes and libraries in the Makefile of
>     SRC_lapw0.
>      >
>      >     On 4/23/19 10:00 AM, Indranil mal wrote:
>      >      > I am using a PC with intel i7 32GB RAM and 2TB HDD with
>     UBUNTU 18.04
>      >      > LTS. I have installed OpenBLAS-0.2.20 and using GNU
>     FORTRAN and c
>      >      > compiler and my settings for compiler/Linker , Libraries
>     are as
>      >     followed
>      >      >
>      >      >   Current settings:
>      >      >    O   Compiler options:        -ffree-form -O2
>      >     -ffree-line-length-none
>      >      >    L   Linker Flags:            $(FOPT)
>      >      >    P   Preprocessor flags       '-DParallel'
>      >      >    R   R_LIBS (LAPACK+BLAS):    -llapack -lblas -lpthread
>      >      >    X   LIBX options:            -DLIBXC -I/opt/etsf/include
>      >      >        LIBXC-LIBS:              -L/opt/etsf/lib/ -lxcf03 -lxc
>      >      >
>      >      > I have installed FFTW3 and mpi but could not install ELPA
>     getting
>      >     the
>      >      > error " No usable BLACS found. If installed in a
>     non-standard place,
>      >      > please specify suitable LDFLAGS and FCFLAGS as arguments to
>      >     configure".
>      >      > And that is why I did not configure the parallel computing.
>      >      >
>      >      > When I am trying to compile the getting the following
>     error and
>      >     attached
>      >      > the compile.msg file. Please help me to install WIEN2K in
>     my system.
>      >      >
>      >      > done.
>      >      >
>      >      > Compile time errors (if any) were:
>      >      > SRC_lapw0/compile.msg:collect2: error: ld returned 1 exit
>     status
>      >      > SRC_lapw0/compile.msg:make[1]: *** [lapw0] Error 1
>      >      > SRC_lapw0/compile.msg:make: *** [seq] Error 2
>      >      >
>      >      > Thanking you
>      >      >
>      >      > Indranil
>      >      >
>      >      >
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>      >
>      >     --
>      >
>      >                                             P.Blaha
>      >   
>       --------------------------------------------------------------------------
>      >     Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060
>     Vienna
>      >     Phone: +43-1-58801-165300             FAX: +43-1-58801-165982
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>     -- 
>     --------------------------------------------------------------------------
>     Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
>     Phone: +43-1-58801-165300             FAX: +43-1-58801-165982
>     Email: blaha at theochem.tuwien.ac.at
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-- 
Peter Blaha
Inst.Materials Chemistry
TU Vienna
Getreidemarkt 9
A-1060 Vienna
Austria
+43-1-5880115671


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