[Wien] Possible clash between different libiomp5.so library file

Laurence Marks L-marks at northwestern.edu
Thu Jan 10 03:16:56 CET 2019


Try "ldd lapw0" to see what shared libraries are being used, then edit your
compilation options to do static compilation. Depending upon what compiler
your have the options will change; do "ifort --help | more" or "ifort
--help > Fort.txt" and read.... (or gfortran, etc).

At least for the non-mpi you can build lapw0 & others without any shared
libraries. I have never seen this fail, but it might.

On Wed, Jan 9, 2019, 19:58 Lawal Mohammed <mohammedlawal08 at yahoo.com wrote:

> Dear Developers and Users,
>
> I am facing a problem and need your help.
> The issue is an error when I submitted a job on cluster machine. The error
> message is:
>
> Calculating Bismuthtest1 in /home/username/WIEN2k/Bismuthtest1
> on node5 with PID 21645
> using WIEN2k_18.2 (Release 17/7/2018) in /software/wien2k-18.2
>
>     start       (Thu Jan 10 09:48:12 CST 2019) with lapw0 (100/99 to go)
>
>     cycle 1     (Thu Jan 10 09:48:12 CST 2019)  (100/99 to go)
>
> >   lapw0  -p   (09:48:12) starting parallel lapw0 at Thu Jan 10 09:48:12
> CST 2019
> -------- .machine0 : processors
> running lapw0 in single mode
> 0.022u 0.036s 0:00.08 62.5%     0+0k 0+56io 0pf+0w
> error: command   /software/wien2k-18.2/lapw0para lapw0.def   failed
> >   stop error
>
> In the output file the error is:
> lapw0: relocation error: lapw0: symbol kmp_aligned_malloc, version VERSION
> not defined in file libiomp5.so with link time reference
> grep: *scf1*: No such file or directory
> grep: lapw2*.error: No such file or directory
>
> Many thanks to Gavin for pointing out that the error was due to clash
> between other libraries with the  Intel Fortran library. However, after I
> reported the issue, system admin confirmed that the environmental variables
> was okay. Any help to rectify this issue is highly appreciated.
>
> I will provide addition information if needed.
>
> Thanks alot for your time.
> With kind regards.
>
>
> *Lawal *
>
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