[Wien] System configuration

[Gavin Abo]

As mentioned in a previous post [1], it looks like ompi_mpi in the error 
messages indicate that your fftw3 was compiled with Open MPI instead of 
Intel MPI.

If you have both Open MPI and Intel MPI on your system, you have to take 
care of the double ii's.

Perhaps, you used mpicc for Open MPI [2] instead of mpiicc for Intel MPI 
[3] when you compiled fftw3 [4].

[1] 
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg13360.html
[2] https://www.open-mpi.org/faq/?category=mpi-apps#general-build
[3] 
https://software.intel.com/en-us/mpi-developer-guide-linux-compilers-support
[4] 
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg18664.html


On 5/29/2019 11:25 AM, Indranil mal wrote:
> /home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function `bogosity_hook':
> api.c:(.text+0x20): undefined reference to `ompi_mpi_comm_null'
> api.c:(.text+0x44): undefined reference to `ompi_mpi_comm_null'
> api.c:(.text+0x73): undefined reference to `ompi_mpi_comm_null'
> /home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function `nowisdom_hook':
> api.c:(.text+0x9d): undefined reference to `ompi_mpi_comm_null'
> api.c:(.text+0xbc): undefined reference to `ompi_mpi_comm_null'
> /home/dps/fftw3/lib/libfftw3_mpi.a(api.o):api.c:(.text+0xd3): more 
> undefined references to `ompi_mpi_comm_null' follow
> /home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function `wisdom_ok_hook':
> api.c:(.text+0x1cc): undefined reference to `ompi_mpi_unsigned'
> api.c:(.text+0x21f): undefined reference to `ompi_mpi_op_land'
> api.c:(.text+0x226): undefined reference to `ompi_mpi_int'
> api.c:(.text+0x24b): undefined reference to `ompi_mpi_comm_null'
> /home/dps/fftw3/lib/libfftw3_mpi.a(api.o): In function `cost_hook':
> api.c:(.text+0x2c7): undefined reference to `ompi_mpi_comm_null'
> api.c:(.text+0x2dc): undefined reference to `ompi_mpi_comm_null'
> api.c:(.text+0x2ee): undefined reference to `ompi_mpi_op_max'
> api.c:(.text+0x2f5): undefined reference to `ompi_mpi_op_sum'
> api.c:(.text+0x308): undefined reference to `ompi_mpi_double'
> api.c:(.text+0x33b): undefined reference to `ompi_mpi_comm_null'
> /home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function 
> `fftw_mpi_local_size_many_transposed_f03':
> f03-wrap.c:(.text+0x3a): undefined reference to `MPI_Comm_f2c'
> /home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function 
> `fftw_mpi_local_size_many_f03':
> f03-wrap.c:(.text+0xa5): undefined reference to `MPI_Comm_f2c'
> /home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function 
> `fftw_mpi_local_size_transposed_f03':
> f03-wrap.c:(.text+0x103): undefined reference to `MPI_Comm_f2c'
> /home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function 
> `fftw_mpi_local_size_f03':
> f03-wrap.c:(.text+0x148): undefined reference to `MPI_Comm_f2c'
> /home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o): In function 
> `fftw_mpi_local_size_many_1d_f03':
> f03-wrap.c:(.text+0x1a2): undefined reference to `MPI_Comm_f2c'
> /home/dps/fftw3/lib/libfftw3_mpi.a(f03-wrap.o):f03-wrap.c:(.text+0x20a): 
> more undefined references to `MPI_Comm_f2c' follow
> /home/dps/fftw3/lib/libfftw3_mpi.a(transpose-alltoall.o): In function 
> `apply':
> transpose-alltoall.c:(.text+0x83): undefined reference to 
> `ompi_mpi_double'
> transpose-alltoall.c:(.text+0x11f): undefined reference to 
> `ompi_mpi_double'
> transpose-alltoall.c:(.text+0x16d): undefined reference to 
> `ompi_mpi_double'
> transpose-alltoall.c:(.text+0x19f): undefined reference to 
> `ompi_mpi_double'
> /home/dps/fftw3/lib/libfftw3_mpi.a(transpose-pairwise.o): In function 
> `transpose_chunks':
> transpose-pairwise.c:(.text+0x53a): undefined reference to 
> `ompi_mpi_double'
> /home/dps/fftw3/lib/libfftw3_mpi.a(transpose-pairwise.o):transpose-pairwise.c:(.text+0x54c): 
> more undefined references to `ompi_mpi_double' follow
> /home/dps/fftw3/lib/libfftw3_mpi.a(any-true.o): In function 
> `fftw_mpi_any_true':
> any-true.c:(.text+0xa): undefined reference to `ompi_mpi_op_lor'
> any-true.c:(.text+0x1f): undefined reference to `ompi_mpi_int'
> /home/dps/fftw3/lib/libfftw3_mpi.a(wisdom-api.o): In function 
> `fftw_mpi_gather_wisdom':
> wisdom-api.c:(.text+0x92): undefined reference to `ompi_mpi_unsigned_long'
> wisdom-api.c:(.text+0xcd): undefined reference to `ompi_mpi_char'
> wisdom-api.c:(.text+0x12d): undefined reference to 
> `ompi_mpi_unsigned_long'
> wisdom-api.c:(.text+0x158): undefined reference to `ompi_mpi_char'
> /home/dps/fftw3/lib/libfftw3_mpi.a(wisdom-api.o): In function 
> `fftw_mpi_broadcast_wisdom':
> wisdom-api.c:(.text+0x222): undefined reference to 
> `ompi_mpi_unsigned_long'
> wisdom-api.c:(.text+0x24d): undefined reference to `ompi_mpi_char'
> wisdom-api.c:(.text+0x2b5): undefined reference to 
> `ompi_mpi_unsigned_long'
> wisdom-api.c:(.text+0x2da): undefined reference to `ompi_mpi_char'
> Makefile:117: recipe for target 'nlvdw_mpi' failed
> make[1]: *** [nlvdw_mpi] Error 1
> make[1]: Leaving directory '/home/dps/WIEN2K/SRC_nlvdw'
> Makefile:108: recipe for target 'para' failed
> make: *** [para] Error 2
>
> On Wed, May 29, 2019 at 5:34 PM Gavin Abo <gsabo at crimson.ua.edu 
> <mailto:gsabo at crimson.ua.edu>> wrote:
>
>     Look inside those compile.msg files as they likely contain
>     messages showing why they failed to compile.
>
>     On 5/28/2019 11:46 AM, Indranil mal wrote:
>>     Thank you for kind response
>>     After following all the instructions given by you I have
>>     installed WIEN2k with Intel parallel compiler. After compiling I got
>>
>>     Compile time errors (if any) were:
>>     SRC_lapw0/compile.msg:make[1]: *** [lapw0_mpi] Error 1
>>     SRC_lapw0/compile.msg:make: *** [para] Error 2
>>     SRC_nlvdw/compile.msg:make[1]: *** [nlvdw_mpi] Error 1
>
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