[Wien] parallel ssh error

Gavin Abo gsabo at crimson.ua.edu
Sat Sep 28 20:18:17 CEST 2019


After you set both "SendEnv *" and "AcceptEnv *", did you restart the 
sshd service [1]?  The following illustrates steps that might help you 
verify that WIENROOT appears on a remote vlsi node:

username at computername:~$ echo $WIENROOT

username at computername:~$ export WIENROOT=/servernode1
username at computername:~$ echo $WIENROOT
/servernode1
username at computername:~$ ssh vlsi
Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-64-generic x86_64)
...
Last login: Sat Sep 28 12:04:07 2019 from xxx.x.x.x
username at computername:~$ echo $WIENROOT

username at computername:~$ exit
logout
Connection to vlsi closed.
username at computername:~$ sudo gedit /etc/ssh/ssh_config
[sudo] password for username:

username at computername:~$ sudo gedit /etc/ssh/sshd_config

username at computername:~$ grep SendEnv /etc/ssh/ssh_config
     SendEnv LANG LC_* WIENROOT
username at computername:~$ grep AcceptEnv /etc/ssh/sshd_config
AcceptEnv LANG LC_* WIENROOT
username at computername:~$ ssh vlsi
...
username at computername:~$ echo $WIENROOT
/servernode1
username at computername:~$ exit

[1] 
https://askubuntu.com/questions/462968/take-changes-in-file-sshd-config-file-without-server-reboot

On 9/28/2019 11:22 AM, Indranil mal wrote:
> Sir I have tried with " SetEnv * " Still nothing is coming with echo 
>  commad and user name by mistake I posted wrong Otherwise no issue 
> with user name and I have set the parallel options file taksset "no" 
> and remote options are 1 1 in server and client machines.
>
>
> On Sat, 28 Sep 2019 11:36 Gavin Abo, <gsabo at crimson.ua.edu 
> <mailto:gsabo at crimson.ua.edu>> wrote:
>
>>     Respected Sir, In my linux(Ubuntu 18.04 LTS) in ssh_config, and
>>     in sshd_config there are two line already "SendEnv LANG LC_*"
>>     "AcceptEnv LANG LC_*" respectively.
>
>     The "LANG LC_*" probably only puts just the local language
>     variables in the remote environment.  Did you follow the previous
>     advice [1] of trying to use "*" to put all variables from the
>     local environment?
>
>     [1]
>     https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19049.html
>
>>     However, ssh vsli1 'echo $WIENROOT' gives nothing (blank).
>
>     That seems to be the main cause of the problem as it should not
>     return (blank) but needs to return "/servernode1" as you
>     previously mentioned [2].
>
>     [2]
>     https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html
>
>     Perhaps the message below is a clue.  It you had set the WIENROOT
>     variable in .bashrc of your /home/vlsi accounts on each system,
>     you likely have to login and use that same /home/vlsi account on
>     the head node as the output below seems to indicate login to a
>     different /home/niel account. Alternatively, setting the WIENROOT
>     variable in .bashrc of all /home/niel accounts on each node might
>     work too.
>
>>        The command ssh vsli1 'pwd $WIENROOT' print "/home/vlsi" the
>>     common home directory and
>>     ssh vlsi1 "env"
>>     ...
>>     USER=niel
>>     PWD=/home/niel
>>     HOME=/home/niel
>>     ...
>>     this is similar as server, and other nodes.
>>
>>     Sir After changing the parallel option file in $WIENROOT in
>>     server to
>>
>>     setenv TASKSET *"yes" from "no"*
>>     if ( ! $?USE_REMOTE ) setenv USE_REMOTE 1
>>     if ( ! $?MPI_REMOTE ) setenv MPI_REMOTE 1
>>     setenv WIEN_GRANULARITY 1
>>     setenv DELAY 0.1
>>     setenv SLEEPY 1
>>     setenv WIEN_MPIRUN "mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_"
>>     setenv CORES_PER_NODE 1
>>
>>     the error is not coming but the program is not increasing steps
>>     after lapw0 it stuck in lapw1
>
>     Since it seemed to be throwing an appropriate error message with
>     TASKSET previously unlike when set to "yes", probably you should
>     change it back to "no".
>
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