[Wien] parallel ssh error
Gavin Abo
gsabo at crimson.ua.edu
Sat Sep 28 20:27:48 CEST 2019
The "sudo service sshd restart" step, which I forgot to copy and paste,
that is missing is corrected below.
On 9/28/2019 12:18 PM, Gavin Abo wrote:
>
> After you set both "SendEnv *" and "AcceptEnv *", did you restart the
> sshd service [1]? The following illustrates steps that might help you
> verify that WIENROOT appears on a remote vlsi node:
>
> username at computername:~$ echo $WIENROOT
>
> username at computername:~$ export WIENROOT=/servernode1
> username at computername:~$ echo $WIENROOT
> /servernode1
> username at computername:~$ ssh vlsi
> Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-64-generic x86_64)
> ...
> Last login: Sat Sep 28 12:04:07 2019 from xxx.x.x.x
> username at computername:~$ echo $WIENROOT
>
> username at computername:~$ exit
> logout
> Connection to vlsi closed.
> username at computername:~$ sudo gedit /etc/ssh/ssh_config
> [sudo] password for username:
>
> username at computername:~$ sudo gedit /etc/ssh/sshd_config
>
> username at computername:~$ grep SendEnv /etc/ssh/ssh_config
> SendEnv LANG LC_* WIENROOT
> username at computername:~$ grep AcceptEnv /etc/ssh/sshd_config
> AcceptEnv LANG LC_* WIENROOT
>
username at computername:~$ sudo service sshd restart
>
> username at computername:~$ ssh vlsi
> ...
> username at computername:~$ echo $WIENROOT
> /servernode1
> username at computername:~$ exit
>
> [1]
> https://askubuntu.com/questions/462968/take-changes-in-file-sshd-config-file-without-server-reboot
>
> On 9/28/2019 11:22 AM, Indranil mal wrote:
>> Sir I have tried with " SetEnv * " Still nothing is coming with echo
>> commad and user name by mistake I posted wrong Otherwise no issue
>> with user name and I have set the parallel options file taksset "no"
>> and remote options are 1 1 in server and client machines.
>>
>>
>> On Sat, 28 Sep 2019 11:36 Gavin Abo, <gsabo at crimson.ua.edu
>> <mailto:gsabo at crimson.ua.edu>> wrote:
>>
>>> Respected Sir, In my linux(Ubuntu 18.04 LTS) in ssh_config, and
>>> in sshd_config there are two line already "SendEnv LANG LC_*"
>>> "AcceptEnv LANG LC_*" respectively.
>>
>> The "LANG LC_*" probably only puts just the local language
>> variables in the remote environment. Did you follow the previous
>> advice [1] of trying to use "*" to put all variables from the
>> local environment?
>>
>> [1]
>> https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19049.html
>>
>>> However, ssh vsli1 'echo $WIENROOT' gives nothing (blank).
>>
>> That seems to be the main cause of the problem as it should not
>> return (blank) but needs to return "/servernode1" as you
>> previously mentioned [2].
>>
>> [2]
>> https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html
>>
>> Perhaps the message below is a clue. It you had set the WIENROOT
>> variable in .bashrc of your /home/vlsi accounts on each system,
>> you likely have to login and use that same /home/vlsi account on
>> the head node as the output below seems to indicate login to a
>> different /home/niel account. Alternatively, setting the
>> WIENROOT variable in .bashrc of all /home/niel accounts on each
>> node might work too.
>>
>>> The command ssh vsli1 'pwd $WIENROOT' print "/home/vlsi" the
>>> common home directory and
>>> ssh vlsi1 "env"
>>> ...
>>> USER=niel
>>> PWD=/home/niel
>>> HOME=/home/niel
>>> ...
>>> this is similar as server, and other nodes.
>>>
>>> Sir After changing the parallel option file in $WIENROOT in
>>> server to
>>>
>>> setenv TASKSET *"yes" from "no"*
>>> if ( ! $?USE_REMOTE ) setenv USE_REMOTE 1
>>> if ( ! $?MPI_REMOTE ) setenv MPI_REMOTE 1
>>> setenv WIEN_GRANULARITY 1
>>> setenv DELAY 0.1
>>> setenv SLEEPY 1
>>> setenv WIEN_MPIRUN "mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_"
>>> setenv CORES_PER_NODE 1
>>>
>>> the error is not coming but the program is not increasing steps
>>> after lapw0 it stuck in lapw1
>>
>> Since it seemed to be throwing an appropriate error message with
>> TASKSET previously unlike when set to "yes", probably you should
>> change it back to "no".
>>
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